Lynx rufus (bobcat): 124509514
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Entry
124509514 CDS
T08475
Name
(RefSeq) histone deacetylase 6-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04613
Neutrophil extracellular trap formation
lruf05014
Amyotrophic lateral sclerosis
lruf05034
Alcoholism
lruf05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
124509514
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124509514
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124509514
09165 Substance dependence
05034 Alcoholism
124509514
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lruf01009
]
124509514
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124509514
04131 Membrane trafficking [BR:
lruf04131
]
124509514
03036 Chromosome and associated proteins [BR:
lruf03036
]
124509514
Enzymes [BR:
lruf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124509514
Protein phosphatases and associated proteins [BR:
lruf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124509514
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124509514
Membrane trafficking [BR:
lruf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124509514
Chromosome and associated proteins [BR:
lruf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124509514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
124509514
NCBI-ProteinID:
XP_046932152
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MTSTGQDSTSTRQRRSRHNPHSPPHDSSVTSKRGVKKGAILSSSPSLAEVKKKGRMKKLS
QAAEQDLIMDLRRLDLNLEAKTLSGTGLVFDEQLNEFHCLWDDSFPEGPERLHAIKEQLI
QEGLLDRCVSFQARFAEKDELMLVHSLEYIDLMETTQYMNERELRILADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGKEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQ
KHDIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTIGFGHG
QGYTINVPWNQVGMRDADYIAAFLHLLLPVALEFQPQLVLVAAGFDALQGDPKGEMATTP
AGFAQLTHLLMGLAEGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPILESPGAPCPSA
LASLCCALEALEPFWEVLVRSVETPEEDILEEDSAEEKDEEGLWRPPALPILTWPMLQAR
TGLVYDQRMMGHHNLWDNHHPEMPQRVLRIMQRLEELGLAGRCLALPARPATEAELLTCH
SAEYVGRLRATEKMKTRELHREGSNFDSIYICPSTFACAQLATGAVCRLVEAVLAGEVLN
GTAVVRPPGHHAERDAACGFCFFNSVAVAARHAQAISGQALRILIVDWDVHHGNGTQHIF
EEDPSVLYISLHRYDHGTFFPMGEEGASSQIGRAAGTGFTVNVAWNGPRVGDADYLAAWH
RLVLPIAYEFNPELVLVSAGFDAAWGDPLGGCQVSPEGYAHLTHLLMGLANGRIILILEG
GYNLTSISESMAACTRSLLGDPPPLLTLSRPPLSGALASITETIQVHRRYWRSLRVMKVE
DKEEPSLSKSVTNPGSAKRMTTPEGNILDAGTEKAVSASSVEESTLGQPKSETAMVELIQ
DQSLEAPTQKAMLDQTTSQAATVEATAGQTTSEEAVGGAEMIQTPPALCTDNQTPTASPE
QGATSQITPSELIENLRTLELNCKAQEAPESQIPEEDKLLGEAAGGQDMLIQSFGVHANT
DQAIFYAVTPLPWCPHLVAVCPTPESGLDVTQPCQDCGTLQENWVCLSCYQVYCGRYVSA
HMLQHHEGSGHPLVLSYVDLSTWCYSCEAYVHHQALLEVKNIAHQNKFGEDMPHSH
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgacctccacgggccaggattccacctcaaccaggcagcgaaggagtaggcataacccc
cattcgcccccccacgactccagcgtcacctcgaagcgaggtgttaagaagggtgccata
ctctcctccagccctagtctagcagaggtaaagaagaaaggcagaatgaagaagctcagc
caagcagcagagcaagacctaatcatggacctgcgaaggctggatctgaaccttgaggcc
aagacactgtctggcactggtttggtgttcgatgagcagctaaatgaattccactgcctc
tgggatgacagcttccctgaaggccctgaacggctccatgccatcaaggaacagctgatc
caggagggcctcctggaccgctgtgtgtcctttcaggctcgatttgctgaaaaggacgaa
ctgatgttggttcacagcctagaatacattgatctgatggagacgacccagtacatgaat
gagagagagctccgcatcctagcagacacctatgactcagtttatctacatccgaactcc
tatacctgtgcctgcctggcctcaggctctgtcctcaggctggtggatgctgtcctgggg
aaggaaatacggaatggcatggccatcatcaggcctcctggacaccacgcccagcacagt
cttatggatgggtattgcatgttcaaccacgtggccgtggctgcccgctacgctcaacag
aagcatgacattcagagggttctgatcgtggattgggatgttcaccacggtcaaggaacc
cagttcacctttgaccaggaccccagcgtcctctatttctccatccaccgttatgagcag
ggtcggttctggccccaccttaaggcctctaactggtccaccataggttttggtcatggc
cagggatataccatcaatgtgccttggaaccaggtggggatgcgagatgccgactatatt
gctgctttcctgcacctccttctgccggtcgcccttgagttccagccccagctggtcctg
gtggccgctggatttgatgcccttcaaggggaccccaagggcgagatggccaccactcca
gcagggttcgctcagctaacccacttgctcatgggtctggcagaaggcaaactgatcctg
tctctggagggtggctacaaccttcgctccttggctgagggcgtcagtgcctcactccac
acccttctgggagacccttgccccatactggagtcccctggcgccccctgcccaagtgcc
ctggcgtcactgtgctgcgctctggaagccctggagcccttctgggaggtccttgtaaga
tcagttgagaccccggaggaggacatcctggaggaggatagcgcagaggagaaggatgaa
gagggactgtggcggcccccagcgctcccaatcctgacgtggcccatgctacaggctcgc
acagggctggtctatgaccagcggatgatgggtcaccacaacttgtgggacaaccaccac
ccagagatgcctcagcgagtcttacgaatcatgcagcgtttggaggagctgggccttgcg
gggcgctgcctcgcgctgcccgcacgtcccgccacggaagccgaactgctcacctgccac
agtgctgagtacgtgggtcgtctgcgggccacagagaagatgaaaacccgggagctgcac
cgcgagggttccaactttgattccatctacatctgccccagcacctttgcctgtgcgcag
ctggccactggcgccgtctgccgcctggtggaggctgtgctggcaggagaggttttgaat
ggtaccgctgtggtgcgtcccccaggacaccatgctgagcgggatgccgcttgtggtttc
tgcttttttaattctgtggctgtggctgctcgccatgcccaggccatcagtgggcaggcg
ctgcggatcctgatagtggactgggatgtccatcatggtaatggaactcagcacatattt
gaggaggaccccagcgtactgtacatttccctgcaccggtatgaccatggcaccttcttt
cccatgggggaggagggtgccagcagccagataggccgggccgcaggcactggcttcact
gtcaacgtggcctggaatggaccccgtgtgggtgacgctgactacctggccgcgtggcat
cgcctggtgcttcctattgcctacgagtttaacccagagctggtgctggtctcagcgggc
tttgacgccgcatggggggacccactggggggctgccaggtgtcgcctgagggctatgcc
cacctcacccacctgctgatgggccttgccaatggccgcattatcctaatcctagagggt
ggctataacctgacatccatctcggaatccatggctgcctgtacccgctccctccttggg
gacccaccaccactgctgaccttgtcgcggcctccactatcaggggccctggcctcaatc
accgagaccatccaagtccatcgcagatactggcgcagcttacgggtcatgaaggtggaa
gacaaggaggaaccctccctttctaagtcagtcaccaaccctgggtcagctaagaggatg
accacaccagaagggaacattctggatgcaggcacagagaaggctgtctcagcatcatct
gtggaagagtccactctaggccaacctaagtcagagactgctatggtggagctcattcag
gaccagtccttggaggctcccacacagaaagccatgctggaccagaccacctcacaggca
gccacagtggaggccacagcaggccagaccacctcagaggaggctgttgggggagctgag
atgatccaaacccctccagctttatgtactgacaaccagactcccacagcctcacctgag
caaggtgccacatcccaaataacccccagtgagctgattgagaatctcaggaccttggaa
ctaaactgcaaggctcaggaggcaccagaatctcagatcccagaagaggataagctactg
ggagaggcagctggaggtcaggacatgctgattcagagctttggggtccatgctaacact
gaccaggccatcttttatgccgtgacaccgctgccctggtgtccccatttggtggcagta
tgtcccacacctgaatcaggcctggacgtgacccaaccttgtcaggactgtggaacactc
caggagaactgggtgtgtctgtcttgctatcaggtctactgtggtcgttatgtcagtgcc
catatgctgcaacaccacgaagggtcaggacacccgctggtcctcagctacgtcgatctg
tctacctggtgttacagctgtgaggcctatgtccaccaccaggctctcctagaagtgaag
aacatcgcccaccagaacaagtttggggaggacatgccccactcacactga
DBGET
integrated database retrieval system
