Lactuca sativa (garden lettuce): 111880851
Help
Entry
111880851 CDS
T05352
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111880851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111880851
04121 Ubiquitin system [BR:
lsv04121
]
111880851
03036 Chromosome and associated proteins [BR:
lsv03036
]
111880851
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111880851
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111880851
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
111880851
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111880851
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111880851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-RING_6
zf-C3HC4_4
zf-RING_UBOX
zf-HC5HC2H_2
RTT107_BRCT_5
zf-RING_10
zf-RING_4
zf-UDP
Motif
Other DBs
NCBI-GeneID:
111880851
NCBI-ProteinID:
XP_023733034
LinkDB
All DBs
Position
7:42305072..42309344
Genome browser
AA seq
829 aa
AA seq
DB search
MEATSHLERMGEELKCPICLSLLKYAVSLTCNHIFCNLCIDKSMKSDSTCPVCKTPYRRR
EIRPAPHMDTLVNIYKSMEVSSGVNIFVTQTEPQTSGPEDQIENATASRSKTTSKALGNT
PTTQNQRKNKGKSLKGSLKKPKRCTSDPVRPSFPIKKRIQVPQHHPQETPTRPANPEGGK
PELIKDRTQTNVAGLEDTDHLHENEERIFSPFFWLRNEEDNEETVEPTPLDLFNVSQSNA
PCFSDIKDSLEDHSGHGTSKNDVNLDSEMFEWTQRPCSPELCASPVKKQEKESDGHDMVP
EKETDNMEVVLPNLSSLQKVDHEVKVKGSKKRAKKTKESIQKKRVKRDTDKKEITTQQPI
KRAKKSKNQDSSNRNNTITETNKTIISQFPIKPSLVNCKIKACSSTKQTDKDKVSKKLKT
SKKVTFSTNEGDKIKPTDDIPRTSENVTTKKSGTLTEICCAFCHSKEESDITGCMTHYLK
GKPITLDHEGAPNAIHAHINCTEWAPNVYFEDDIAVNLEAEFSRSKRIKCSCCGIKGASL
GCYEKNCHRSFHFPCAKLTPECRWDKDNFVMLCPLHASHKLPNETCGSQLKQKNKSVPKR
QLTNTRLDTHGLFTKVVLCCSALTNIEKETIVEFEKLSGVTILKTWDSRVTHVIASVDEN
GACRRTLKYLMGIIEGKWILTIEWIKACLEVKKPVDEQLYEINLDVYGFTGGPKLGRFRL
LNKEPKLFNGLKFYFTGDFVASYKGYLHDLIIAAGGTVLHRKPVNLNDEKQFLIYSIEIP
DKIKLKERNLVLSQRKSDAEALARSSGGVAVSNFWILNSIAASKLQDFD
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacttcgcacctggaacgaatgggcgaagaactcaagtgtcccatctgttta
agtcttttgaagtatgcagtttcgcttacgtgcaatcacatattttgcaatctttgcatc
gacaaatctatgaagtccgattcaacttgtcctgtatgcaaaaccccttatcggcgaaga
gagattcgtcctgcacctcacatggatactttagtgaacatttacaagagcatggaagtt
tcttctggagtcaacatatttgtcactcaaacagaacctcaaacatcaggtcctgaggat
caaatagagaatgcgactgcttctagaagtaagacaaccagcaaggcccttggaaacaca
ccaacgacacaaaatcagagaaaaaacaaagggaaatccttgaaaggatctctaaagaag
cctaaaagatgtacttcagatcctgtgagaccatctttcccaataaagaaaaggattcaa
gtgccacaacatcatccacaagaaacaccaacaagacctgcaaatcctgaaggtgggaag
cctgagcttatcaaagatagaactcaaactaatgtggctggattagaagacacagatcat
ttacatgagaacgaagaaagaatattttcccctttcttttggcttagaaatgaagaagat
aatgaagaaacagtcgaacctacacctttagatctttttaatgtttcacaatcaaatgct
ccatgcttcagtgatatcaaggactcccttgaggatcattctggtcatgggacctcaaag
aatgatgtcaatttagatagtgaaatgtttgaatggacacaaagaccttgctctcctgag
ctttgtgcaagtccagtaaagaagcaggaaaaagaatctgatggacatgatatggtccca
gagaaggagactgataacatggaagtggttttaccaaatttatcctcacttcaaaaggtt
gaccatgaagttaaagtcaaagggtccaagaagagagctaaaaagaccaaggaaagcatc
caaaagaagagagtcaagagagacacagacaaaaaagaaatcactactcagcaacctata
aaaagggcaaaaaagtcaaaaaaccaagattcaagtaacagaaataataccataactgag
accaacaagactatcatctcccagtttcccattaagccttctcttgtcaattgtaagata
aaagcttgttcttccacaaaacaaactgataaagataaagtttccaagaaattgaaaact
tctaaaaaggtgacattttctacaaacgaaggggataagatcaaaccaactgatgacatt
ccaagaacgtctgaaaatgttactacaaagaaaagtggcactctgactgaaatttgttgt
gctttctgccactccaaagaagaatcagatattactggatgcatgacacactaccttaaa
ggaaagcctataactttagatcatgaaggtgcaccaaatgccatacatgcacatatcaac
tgtacagaatgggctcctaatgtatactttgaagatgatattgctgtcaatttagaagct
gaattttctagaagcaagaggattaaatgctcttgctgtggaataaagggagcatctctt
ggatgttatgagaaaaattgtcacagaagctttcattttccttgtgcaaaactaacacca
gaatgcagatgggataaggataactttgtcatgttatgcccacttcatgcctctcataag
ctcccaaatgaaacatgtggttctcaactaaaacagaaaaataaatctgtcccaaaaaga
cagttgacaaacacacgtttggacacacatgggctattcacaaaagttgttctttgttgc
tctgctctcacaaacatcgaaaaggaaaccattgtagagtttgagaagttatctggagtt
acaatactaaaaacatgggattctagagtgacacatgtcattgcatcagtggatgaaaat
ggcgcatgtagaagaactttaaaatatctcatgggtatcatagagggaaagtggatcctc
accattgaatggattaaggcttgcttggaggtcaagaaacctgttgatgaacagctttat
gagattaatcttgatgtttatggatttactggaggtcctaaacttgggcgttttaggcta
ctcaacaaggaaccaaaactatttaatggtttgaagttctattttactggagattttgtg
gcttcatacaagggatatttacatgatcttataattgctgctggaggcacagtgctacac
aggaagcctgtaaatttgaatgatgaaaagcagttcttgatttatagcattgagattcct
gataagattaaactgaaagagcgaaatcttgttttgagtcaaagaaagtcagatgcagag
gctctagcaagatcaagtggtggtgtagctgtgagcaacttttggatcttgaattctatt
gctgcttctaagcttcaagattttgattag
DBGET
integrated database retrieval system
