Manihot esculenta (cassava): 110628392
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Entry
110628392 CDS
T05761
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110628392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110628392
04121 Ubiquitin system [BR:
mesc04121
]
110628392
03036 Chromosome and associated proteins [BR:
mesc03036
]
110628392
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110628392
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110628392
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
110628392
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110628392
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110628392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
BRCT
BRCT_2
zf-C3HC4
zf-HC5HC2H_2
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
zf-RING_UBOX
zf-RING_5
zf-RING_2
Prok-RING_4
zf-RING_10
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
110628392
NCBI-ProteinID:
XP_043804981
LinkDB
All DBs
Position
12:3126780..3132588
Genome browser
AA seq
759 aa
AA seq
DB search
MADSTKQNSVRTMNPWVLHLQKLGLELKCPLCLNFLKRPFLLPCDHIFCNACLPETTQFG
PQCPVCKAQYVDRDLRLMPFIENMVTIYRSLDAAFFANLFQSSSSDTGRILEQYPTSKSA
DCNDKFCKEPFKAAREDNSNSGRSMFMLTSNNLAQVPLNGSAENGVQKIDMADKCNVTKH
LKYKEYDMLASGGDKGDGEQNINSPPASSLIRAGGIQECSIMQIGMNQVDQLSAGSPPSF
GDIKSSENDSYDQGGDSSPKNYQAMRLIKRNLDDSIRPERYDSFASRIDGVDTRDSKRHK
KLSYGPLNVCTNNMNHMVASSQAENLGTNCCQSEDKSVPPHNGAQPLALLDDLSTGKIIC
EFCQSSRISKDTGPMLHYVNGKPVEGDEAFLSSAIHVHRACIEWAPQVYFVGENVKNLKA
ELARGAKLKCSSCGLKGAALGCYHKSCRRSYHVPCARAVAGCRWDFDDFLVLCPSHSSVR
FPSEKKFKSKKHNLEHCHVPTQIAPKQSNFLSESLHGAEEWVFCGSALSSEEKCLLVEFG
SMIGVPVTKFWKQNVTHVIAATDTKGACTRTLKVLMAILNGRWVLTIDWVKACMKSMCPV
DEEPYEVGLDNHGCCNGPRTGRLSVLDKAPKLFDGLRFYFSGDFVLGYKEDLQNLVTTAG
GTVLRIVEELVEKTHEPAAAAAPSKTIVVYNLDPPQGCKLGEEVSILWQRLNEAENLAAK
IGSQVIGHTWVLESIASYKLQPFVSLHGIRDASNSIIEE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcgactaaacagaatagcgttaggactatgaacccttgggttctccatctc
cagaaattgggtcttgagctcaaatgtcctctttgcttaaacttcctgaagcggccattt
ttgcttccttgcgatcacattttctgcaatgcatgcctacccgaaacgacgcagtttggc
ccacagtgccctgtttgtaaagctcaatatgttgatcgggatctgaggctcatgcctttt
attgaaaacatggtaacaatatacagaagcttggatgctgctttctttgccaatctgttc
cagtcaagctcatctgatactgggagaattttggagcaatatcctacttcaaaaagtgca
gattgcaacgataagttctgtaaggaaccttttaaagcggctagggaggataattcaaac
agtgggaggtccatgtttatgctgacgagcaataacttagctcaggttccattgaatggt
tctgctgaaaatggggttcaaaagattgacatggcagacaaatgcaatgtgacaaagcac
cttaaatataaggaatatgatatgttagccagcggaggggataaaggtgatggagagcag
aatatcaattctccaccagcaagttcccttataagagctggggggatccaagagtgtagt
attatgcaaatagggatgaatcaggtggatcaattgtcagctggtagccctccttcattt
ggtgatattaagagttcagaaaatgacagttacgatcagggtggtgatagtagtccaaaa
aattatcaagcaatgagattgatcaagagaaatcttgatgatagcataagaccagagagg
tatgacagttttgcatccagaattgacggagttgatacaagggactcaaagagacataag
aagttaagctatggcccattgaatgtatgcacaaataatatgaatcatatggtggctagt
tctcaagctgaaaatttggggaccaattgttgtcaatcggaagacaaatctgtaccacct
cataatggtgcacagcctcttgcactgttagatgacttgtcaacaggaaaaattatttgt
gaattttgccagtcctctagaatctcaaaggatactggtccaatgttgcactatgtcaat
gggaagccagtagagggtgatgaggcatttctctccagtgccatacatgttcacagggca
tgtattgaatgggcaccacaagtctattttgttggtgaaaatgttaagaatctgaaggca
gaattggctaggggtgcgaaactaaagtgtagcagttgtgggctgaagggagcagctcta
ggctgctatcataaatcttgcaggagaagctatcatgttccctgtgcaagggcagttgct
ggatgccgatgggattttgatgacttccttgtgctttgtccatctcattcttcagtcaga
tttccaagtgaaaagaagttcaagtctaagaaacacaacttagaacattgtcatgtacca
acacaaatagccccaaaacagtctaattttttgtcagaatcattgcatggagcagaagaa
tgggttttttgtggatctgctctctcttctgaggagaagtgtcttctggttgagtttggg
agcatgattggtgtgcctgtaaccaaattctggaaacaaaatgtcacacatgtaattgca
gccacagatacaaagggtgcatgcaccaggacattgaaagttctcatggcaattttgaat
gggagatgggttcttacaattgactgggtaaaggcatgcatgaaatctatgtgccctgtt
gatgaagaaccttatgaagttggtctcgataaccacgggtgctgtaatggccccagaact
ggcaggcttagtgtgttggacaaggcaccaaaactatttgatggcttgagattctatttt
tctggtgactttgtgttgggttacaaggaagatctccagaatttagtcacaactgcagga
ggtaccgttttgaggatagtggaagaattagtggaaaaaactcacgagccagcagcagca
gcagctccttcaaaaacaatagttgtctacaaccttgatcctccacaaggatgcaagtta
ggcgaagaagtctcaattctatggcagagactaaatgaagcagaaaacttggctgctaaa
attggatcccaggtcattggtcatacatgggtactggaatcaattgcttcctataagttg
cagccttttgtcagcttgcatggtattcgcgacgccagcaactcgataatcgaagaataa
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