Magnolia sinica: 131245804
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Entry
131245804 CDS
T09699
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
msin
Magnolia sinica
Pathway
msin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131245804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131245804
04121 Ubiquitin system [BR:
msin04121
]
131245804
03036 Chromosome and associated proteins [BR:
msin03036
]
131245804
03400 DNA repair and recombination proteins [BR:
msin03400
]
131245804
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
131245804
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
131245804
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
131245804
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
131245804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_6
zf-C3HC4
zf-C3HC4_2
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_2
RTT107_BRCT_5
zf-RING_5
zf-RING_10
PTCB-BRCT
zf-Nse
U-box
DUF4944
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
131245804
NCBI-ProteinID:
XP_058101492
LinkDB
All DBs
Position
5:complement(25126354..25154752)
Genome browser
AA seq
740 aa
AA seq
DB search
MADFEICRRFLNPCLLHLQKMGLELKCPICLNLLSQPMLLPCNHIFCRSCISRPMEFGLK
CLVCKSPFVNQDLRFAPHMETMVSIYKSLDAAFGDVEKSSNHHPVPSNLDIVDASRREQK
QNLHRENSSNVQTYLPSFLANKRVQASLHPTKNEVETPQSLVKSSKPRNDGESADCMGLG
NQNGEYSANEEALVNGRDPASSPFSLLRDPEYEERGTHERDVSQLVQSSPDSPPSFGDIK
DSDDDSNDQGSEHSAERLSSKGASKKGPEDGASLEAEVVLRCSPITDPSVRKSDVSRKLN
VRSPSSSEGDQTRDSKRQKKSDCGLPDLMQLSNPSSSTNTGPAAVCAFCQSSKYSKATGP
MLHYSNGTEIEADQAIHSNALHVHKQCVEWAPQVYFVGETVKNLEVEVARGAKIKCSSCG
KKGAALGCYAKSCRRSFHVPCAVEILECRWDFDNFLMLCPAHSSLKLPNERSKSGKKIRA
NKFSVAQPAYPQTSEDLPSSTTQKSNKHWTASPDATREWVLCGSALSSAEKDLVSEFASL
TGATVTKVWNTNVTHVIAAADDMGACSRTLKFLMAILNGRWILKIDWIKACMEAKHPVCE
EPYEISSDVHGSCDGPKNSRIRVIEKAPKLFSGLNFYFSGDFMPSYKGYLQDLVVAAGGT
VLVKKDMVPQTSSTRTTPTSTLVIYSLDPSQECKSGQLSSVVQQRLEEAEAIAAETGSQA
VGHAWLLESIAACKLQSLDL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggattttgagatttgccgtcgatttctcaatccatgcttgcttcatctacagaaa
atgggtttggagctgaaatgccccatctgcctaaacttgctgagccagccaatgttgctg
ccctgtaatcatatattttgcaggtcttgtatttctagacctatggaattcggattgaaa
tgccttgtctgcaaatcaccatttgttaatcaggatttaaggtttgctccacacatggaa
actatggtatccatctacaaaagtttggatgctgcttttggagatgttgagaagtcttca
aaccatcatccagtcccgagcaacttagatattgttgatgcatcaagaagggaacaaaaa
caaaaccttcatagagaaaattcaagcaatgtgcaaacatatctaccttctttcctggca
aataaacgagttcaggcttctcttcatcctaccaaaaatgaggttgaaactcctcagagc
cttgtaaaatctagtaagccaagaaatgatggagaaagtgctgactgtatgggattgggt
aaccagaatggtgaatatagcgccaatgaagaggctttggttaatgggagagatcccgct
tcatcaccattttccttgttaagagaccctgaatacgaagagcgtggaactcatgaaaga
gatgtgagtcagctggtacagtcatcccctgacagccctccatcgtttggcgacatcaag
gattctgacgatgacagcaatgatcaaggcagtgagcatagtgcagagaggttgtcatct
aagggtgcgagcaagaaaggaccagaagatggggccagcctagaagcagaagttgtttta
cgctgttcaccaataacagatccttcagtcaggaaatcagatgtgtcaaggaaattaaat
gttagaagcccctcctcatctgaaggggaccaaaccagagactcaaagagacagaagaag
tcagattgtgggcttcctgatttgatgcagctgtccaatccttctagctctacgaacaca
ggtccagctgctgtatgtgcattttgtcagtcctctaaatactctaaggctactggaccg
atgttgcattattccaacgggacagaaattgaggcagatcaagcaatccactccaatgcc
ctgcatgttcacaagcaatgtgttgaatgggcaccccaagtgtactttgttggtgagact
gttaagaatttggaggtggaagtggcaaggggtgcgaagatcaaatgcagcagttgtggg
aagaagggggctgcccttggttgctatgccaagtcctgccggaggagctttcatgttccc
tgtgcagttgaaatattagaatgtcggtgggattttgataacttcctaatgctatgtcca
gctcattcttcactcaaattacccaatgaaaggtccaagtctgggaagaagattagggca
aacaaattttcagtagctcaaccagcctacccacaaacttcagaggatcttccctcttca
acaacccaaaaatcgaacaaacattggacggcttcacctgatgcaactagggaatgggtt
ctatgtgggtccgcactctcatctgccgagaaggatttagtgtctgagtttgcaagctta
actggtgcaactgtcacaaaggtttggaatacgaatgtcacccatgtcattgcagctgct
gatgatatgggtgcttgcagcagaactctgaaatttctcatggccatcttgaacggaagg
tggattttgaaaattgattggataaaagcttgcatggaagctaagcatcctgtctgtgaa
gagccttatgaaatcagcagtgatgttcatggtagttgtgatggccccaaaaatagcaga
atcagagtaatagagaaggcacccaagttattcagtggcctaaacttctatttcagtggg
gacttcatgccctcgtacaagggataccttcaggatctggtggtagcagcaggtggtact
gtcctagtgaaaaaagatatggtcccacagacttccagtacaagaacgactcctacatca
accttagttatttatagcttagatccatcacaggaatgcaaatcaggacagttatcttca
gttgtacagcagaggttggaagaagcagaagccattgctgctgaaactggctctcaggcg
gtgggccatgcctggcttttagagtccatagctgcttgcaaactgcagtccctcgacttg
tga
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