Malus sylvestris (European crab apple): 126585601
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Entry
126585601 CDS
T09027
Name
(RefSeq) LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126585601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126585601
04121 Ubiquitin system [BR:
msyl04121
]
126585601
03036 Chromosome and associated proteins [BR:
msyl03036
]
126585601
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126585601
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
126585601
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
126585601
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
126585601
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
126585601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-C3HC4
zf-HC5HC2H_2
zf-RING_2
zf-C3HC4_3
zf-RING_6
zf-C3HC4_4
zf-RING_UBOX
zf-RING_10
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
126585601
NCBI-ProteinID:
XP_050106014
LinkDB
All DBs
Position
10:complement(36463909..36469615)
Genome browser
AA seq
1033 aa
AA seq
DB search
METPPPHLEKIGRELKCPICLSLLSSAVSLNCNHLFCNCCIVKSMKSGSNCPVCKIPYRR
REVRPAPHMDNLVSIYKSMEDDLGINIFVTQNAPPTKSSDGKHHAEDDFSHGFQDRAQKQ
KTLRGKRSRKTKANLESSGSISIKPSFPNKKRVQVPQSPLSETPTRHEKLEGDLMADRAK
QSSKTLKEKPVLNEKGELVLSPFFWLNDKDVENLSQHSSGDQLSDLPSPNVPTFSDIKDS
DDENSVRSLPGEVHGTSSNAADLFDSEMFEWTQRACSPELFPSPEMQVADDEHDRVQEKE
SKEVSQNKKSDELSVKSARSKRNKKSNGNMDFLRDLPTAGTKDVSHEVVSNESDKRVRKT
RNLMKRKCATSHTDPGTNISVTSKGSEVFYEEQACXNNGGSLAKTCKRSKKGHSSVVTKP
TSENVHVLSTRADSQINGDENRVTESPTSIGKNAGSDELSSKKAGNIYKEVNDKNKIDRP
VRSKKQKMVSMKKTMLEDVSEIQKQANKDTPTELSPTNLPTDDNQKASESRNKSRKLARK
AKSGDRELKSKKKLKASSDGNSKDDTSVEIGEGHGNVNENGNETAEKSKDNHNVITDQSP
VQKLLSFTNNVVLKRCEAVPSNIQCAFCLSSEESEASGEIVHYCNGKPVAVDHDGRLKVI
HVHRTCAEWAPNVYFEDDIAINLEAELTRSRKIKCSCCAIKGAALGCCEKSCRRSFHVTC
AKLMPQCRWDTDNFVMLCPIHASSNLPNESPGSQARRKKNPRKQPNIERPKVAAKQDSNI
PPDQKFCGSSKKLILCCSSLTNAERESVSGFERLSGLTVLKNWDSSVTHIIASTDENGAC
RRTLKVLMGILEGKWILSVEFRRVDQRCVCPSVCAGINACTEAMKLVDEEPYEINVDIYG
IRDGPRLGRLRLQNKQPKLFEGFKFYFMGDFIPSYKGYLQDLVIAAGGTILQRKPVPEGP
KALSAGSPKCQTFIIYSLELPDQCHCSKKSTIFNTRRADAKALATSAGAKVASNSWVLNS
IAACKLQNLSDSK
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggagactcctccgccccacctcgagaagatcggcagagaactcaagtgccccatttgt
ttgagtctgctgagttctgcggtttcactcaattgcaatcatctcttctgcaattgttgc
attgtgaagtcgatgaaatcgggttccaattgtcctgtttgtaaaatcccatatcggcgt
agagaggttcgcccggctcctcacatggataatttggttagtatttacaagagcatggaa
gatgatttgggaattaatatatttgtcactcagaatgcacccccaactaaatcatcagac
ggaaaacatcatgctgaagatgattttagccacggctttcaggatagagcgcagaaacag
aaaaccttaagaggaaaaagatccaggaaaactaaggccaacctggaaagttctggttct
atttcaattaaaccttcatttccaaacaagaaaagggtccaggttccacagtctcctctt
tcagaaaccccaacccgccatgaaaagttagaaggtgatttaatggctgatcgagcgaag
cagagttcaaaaacactaaaggagaagcctgttctaaatgagaagggagaactggttctg
tcacctttcttttggttgaatgacaaagatgtagaaaatttgagtcagcattcttccggt
gatcaacttagcgatcttccatctccaaatgttcccacattcagtgatatcaaagactct
gatgatgaaaattctgttaggtccctaccgggagaagtgcacggcacatcttctaatgct
gcagatctatttgatagtgagatgtttgaatggacacaaagagcttgctctcctgaactc
ttcccaagtcctgagatgcaggttgcagatgatgaacacgatagagttcaagagaaggaa
tcaaaagaagtctcacaaaacaagaaatcagatgaactttctgttaaaagtgcaaggtct
aaaagaaacaaaaaaagtaatggaaatatggattttctgcgagatcttcccactgctgga
actaaagatgttagtcatgaagttgttagtaatgaatctgacaagcgagttaggaagaca
aggaatctcatgaaaagaaaatgtgctacaagccatacagatccaggaacaaatattagt
gtcacttcaaagggatctgaggtattttatgaagaacaagcatgtnngaataacggtggt
tctttagctaagacttgcaaaaggagtaagaagggacattcatctgttgtaaccaagccc
acatctgaaaatgttcatgtcctctctaccagagctgatagtcaaattaatggtgatgaa
aatagggtaactgaatcacctacttcaataggaaaaaatgctggcagtgatgaactgtcc
agtaagaaggctggaaatatctataaggaggtcaatgacaagaacaagattgaccgccca
gtaaggtcaaaaaaacaaaagatggtctccatgaaaaagacaatgcttgaggatgtatca
gaaatacagaagcaagcaaataaggatactcctactgagttgtctcctacaaatcttccc
acagatgataaccagaaagcctctgaatccaggaataaatccagaaaacttgctagaaaa
gccaagtcaggtgatcgagaactgaaaagtaagaaaaagctgaaagcttcttctgatggc
aactcaaaggatgatacttctgttgagattggagaaggtcatgggaatgttaacgaaaat
ggaaatgaaaccgctgagaagagcaaggacaatcataatgttataactgatcaatcacca
gtgcagaagcttctttcatttacaaacaatgtggttttgaagagatgtgaagctgttcct
agtaatatccagtgtgctttctgtctttcatcagaagaatcagaggcttctggagagata
gtccactattgtaatggcaagcctgttgctgtggatcacgatggaagactcaaggttata
catgtacacaggacctgcgctgaatgggctcctaatgtctattttgaagatgatattgct
attaatcttgaagctgaattaactaggagtcgtaaaattaaatgttcttgctgcgcaatc
aaaggagctgctcttgggtgctgtgagaagagttgtcgtaggagctttcatgttacctgt
gcaaagctgatgcctcaatgtcgctgggatactgataactttgttatgttatgccccatt
catgcctcctccaatttgccaaatgaaagccctggatctcaagcaaggaggaagaagaat
cctagaaaacaacctaatattgaacgtcctaaagttgctgctaaacaagacagcaatatc
cccccagatcagaagttttgtggatcgtccaagaaattgattctttgttgttcatctctc
acaaatgcagagagggaatctgtctctggatttgaaagattatctggacttacggttttg
aagaattgggattctagtgttacacatattattgcatcgacagatgaaaatggagcatgc
agaagaaccctcaaagttttgatgggtatcttggaggggaagtggattctgagtgtggag
tttcgtagagtggatcaaagatgtgtttgtccgtctgtttgtgcagggattaatgcttgc
acagaagcaatgaaactagttgatgaagagccttatgaaatcaacgttgacatttatgga
atcagggatggtcctcgacttggtagactaaggctgcagaacaagcaaccaaaacttttt
gaggggttcaagttttacttcatgggggacttcataccttcatacaaggggtatttacaa
gaccttgtaatagctgctggaggaacgattttgcaaagaaaacctgttccagagggcccg
aaagccttgtcagctggttcccccaaatgtcaaaccttcataatttatagccttgagcta
cctgaccaatgtcattgcagcaagaagagtacaattttcaacactaggcgggctgatgcg
aaggctttggccacctccgctggagccaaggtagcaagcaactcgtgggtattgaactcc
attgctgcctgcaagttacaaaatctctctgattccaaatag
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