Malus sylvestris (European crab apple): 126585838
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Entry
126585838 CDS
T09027
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126585838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126585838
04121 Ubiquitin system [BR:
msyl04121
]
126585838
03036 Chromosome and associated proteins [BR:
msyl03036
]
126585838
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126585838
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
126585838
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
126585838
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
126585838
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
126585838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
PTCB-BRCT
Prok-RING_4
zf-RING_5
zf-RING_6
zf-RING_2
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
126585838
NCBI-ProteinID:
XP_050106350
LinkDB
All DBs
Position
10:complement(29715264..29720279)
Genome browser
AA seq
706 aa
AA seq
DB search
MQRFLSFRTFVSMADPNPNPKCSDSSSTRSTMNPWVLHFQKLGLELKCPLCLNLLNRPTL
LPCNHIFCNSCIPSSSCPVCKAEVADRDLRPVLFMENIVAIYKSLDASFCTNLLQPVSSD
VRTILEQNPISPNISFAGTIAKEPFDNDQGGNSNSGHSIYSSSAHERVWAPCSLNCSVAD
GVGKNGKVKNCSMPIDANGKVLDFARSGLGNPNSQLLRSHIRAGGLEECMTVERDMNHAA
QSLPNSPPSFGDAKCSDNDSCGRRCEQISENSLVRRSISNIDDSRVGQKRHDSFATEIDG
HLRKKIKYEPVSETYSELEYKFSTAPNESFTKRTICAFCQSSTISVVTGPMLHYSKERMV
EGDEANASNVIHVHKICIDWAPQVYFEGENVKRLKAEVLRGAKLKCTKCGLKGAALGCFV
KSCRRSYHVTCAIEISKCRWDKENFLLLCPAHCSTKFPSEKSNYGKPKICPPPNSVEVPD
KVNQWIMCPSGLSSEEKLLLIKFAEKIGATVSRTWRPDVTHVIAALDGDGAYVRTFKTCM
AILAGTWILKIDWVKACMEATDHVNEEPYEVSLDNYGCCDGPKTGRLRATNNDPKIFNGL
SFYFAGDFVLDRKEDLQDLIIAAGGTVFNSSEEVLERSCLEQTASRMLVVYNLDPPEGCK
LGEEVSILWQRSNEAQDIAAKIGSQIIGHTWLLESIARCKLQPFVC
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgctttctgagtttccgaaccttcgtttcaatggcggaccctaaccctaaccct
aagtgcagcgacagtagcagtaccaggtcgacgatgaacccgtgggttcttcattttcag
aaactgggcctcgagctcaagtgcccgctctgcttgaatttgcttaatcggccgacatta
cttccatgcaatcacattttctgcaattcctgcatacccagttcgagttgccctgtttgt
aaagctgaggttgcggatcgagatctcaggcctgtgctattcatggaaaacatagtagcc
atctataaaagcttggatgcgtctttctgcaccaatttgttgcagcccgtttcttctgat
gttagaaccattttggaacaaaaccccatttcgcctaatatcagttttgctggcacaatt
gctaaagaaccatttgacaatgaccaaggcggtaattcaaacagtggacattccatctat
tcgtcgagtgctcatgaacgagtttgggctccttgtagtctaaattgttctgttgctgat
ggagttggcaagaatggcaaagtaaaaaactgtagcatgccaatagatgctaatggcaag
gtattggattttgctagaagtggattgggaaatcccaattcacaactactgagatctcat
ataagagctggtggactcgaagagtgcatgactgtagaaagagatatgaatcatgcagca
cagtcattgcccaacagtcctccttcatttggtgatgccaaatgttcagataatgatagc
tgtggtcggcgctgtgagcaaatttcagaaaattctttggtcaggagatcgatcagcaac
attgatgatagtagagtaggccagaaaaggcatgatagttttgcaactgaaattgatggt
catttaagaaagaaaataaagtatgagccagtttcagaaacttattctgagctcgaatat
aagttcagtacagctcctaacgaatcattcacaaagagaacaatttgtgcattttgccag
tcttccacaatctcagtggttacagggccaatgttgcattattctaaagagagaatggta
gagggagatgaggcaaatgcttcaaatgttatacatgttcacaaaatatgcattgattgg
gcaccgcaagtgtattttgaaggtgaaaatgtaaagagattgaaggcagaagtgttaagg
ggtgcgaagctaaaatgcaccaaatgtgggctaaagggagcagctttgggatgctttgtg
aagtcctgccggagaagctatcatgttacctgtgcaattgaaatttctaaatgtcgttgg
gacaaggaaaactttctgctgctctgtccagctcattgttcaactaaatttcccagtgag
aagtcaaattatgggaagcccaaaatctgtccgccacccaacagtgtggaagttccagat
aaagtgaatcaatggatcatgtgcccatccggtttgtcttctgaagagaagcttctttta
atcaagtttgccgagaagattggtgcaactgtgtccaggacctggagaccagatgttaca
catgtgattgcagccctggatggggatggtgcatatgtgaggacattcaaaacttgcatg
gccattttggctggaacatggattctgaaaattgactgggtaaaagcatgcatggaagcc
acagatcatgtgaatgaagaaccatatgaagttagtcttgataactatggatgctgtgat
ggcccaaaaactggcaggcttcgggcaacaaacaacgatccaaagatctttaatggtttg
agtttctattttgctggtgattttgtactggatagaaaggaagatcttcaagatttgatc
attgcagcaggaggcacagttttcaacagctcagaagaagtgctggaacgaagttgtctt
gaacagactgcttcaaggatgctagttgtatacaacctcgacccaccagaaggatgtaag
ttgggggaagaagtttcgatcctttggcaacggtcaaatgaggcccaggatatagctgca
aaaattggatcacaaatcatcggtcacacatggctcttggaatcaattgcgagatgcaag
ttacagccttttgtctgttga
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