Notothenia coriiceps (black rockcod): 104956689
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Entry
104956689 CDS
T04920
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104956689 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104956689 (polb)
Enzymes [BR:
ncc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104956689 (polb)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104956689 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
104956689 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
NTP_transf_2
DUF4806
Cdd1
Motif
Other DBs
NCBI-GeneID:
104956689
NCBI-ProteinID:
XP_010782521
UniProt:
A0A6I9P8K9
LinkDB
All DBs
Position
Unknown
AA seq
336 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLVELANYEKNVNRAIHKSNAYRKAASTISKYPNKIRNGEEAK
KLEGVGAKISEKIDEFLQTGTLRKLEKIRTDDTSSSINFLTRVTGIGPAAARKFFEEGVK
TLEDLKKIEHKLNHHQQIGLRYFEEFEKRIPRSEMEQMETFIHEELKKVDTEYIGTICGS
YRRGAASSGDIDILLTHPDYTSETEKQPKLLHVVVEHFESIGFVTDNMSKGDTKYMGVSQ
LQKSVEDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR
PVGVTGVAGEPLMVDSERDIFEYIHYKYKEPSERSQ
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaggaaagcgccacaggaatccccaaatgagggaattacagactttcttgtc
gagctggccaattatgagaaaaacgtgaacagggcaatacacaagtccaacgcttacagg
aaagcagcatcaaccatttctaagtaccctaacaaaatcagaaatggcgaagaggccaag
aaactggaaggtgttggagctaaaatatcagaaaagattgatgagttcctgcaaactggc
acgctacggaaactggaaaagattcgtaccgatgacaccagctcttccattaatttcctc
accagagtgactggaattggccctgctgctgccaggaagttctttgaagaaggggtgaag
acgttagaagatctgaaaaagatcgagcacaagctaaaccatcatcaacagattggactc
aggtacttcgaagaatttgagaaaaggattccacgttctgaaatggagcagatggagact
tttattcatgaagagttgaagaaggtcgacacagaatatattgggacgatctgtggaagc
tacaggagaggtgcagcatcgagtggtgatattgatattttgctgacccacccagactac
acctctgagactgagaagcagcctaagctccttcatgtcgtggtggaacatttcgagtcc
attgggtttgtgactgacaatatgtccaaaggagacaccaagtacatgggagtcagccag
cttcagaagagcgtagaggatgaggaagaataccttcacaggcgtattgatatcaggtta
attcccaaggaccagtactactgtggagttctgtatttcactggaagtgatatcttcaat
aaaaacatgagaactcatgctctggagaaaggcttcactctcaatgagtacaccatacgg
cctgttggagtcactggtgtggcaggggagcctctgatggtggatagtgagagagacatc
tttgaatacatccactacaaatacaaagagccaagtgagcgcagccagtga
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integrated database retrieval system
