Naegleria gruberi: NAEGRDRAFT_76158
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Entry
NAEGRDRAFT_76158 CDS
T01241
Name
(RefSeq) histone deacetylase
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ngr
Naegleria gruberi
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngr01009
]
NAEGRDRAFT_76158
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_76158
04131 Membrane trafficking [BR:
ngr04131
]
NAEGRDRAFT_76158
03036 Chromosome and associated proteins [BR:
ngr03036
]
NAEGRDRAFT_76158
Enzymes [BR:
ngr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
NAEGRDRAFT_76158
Protein phosphatases and associated proteins [BR:
ngr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
NAEGRDRAFT_76158
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
NAEGRDRAFT_76158
Membrane trafficking [BR:
ngr04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NAEGRDRAFT_76158
Chromosome and associated proteins [BR:
ngr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
NAEGRDRAFT_76158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Beta_helix
NosD
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
8860506
NCBI-ProteinID:
XP_002668933
JGI:
Naegr1_76158
LinkDB
All DBs
AA seq
1316 aa
AA seq
DB search
MSRRQRPQTRTTNPIAAAGLNMEDVPEFLEGCTFFVDPLTHEEAEAELYREIIKKLGGQV
VTMYKSNITHLMASVQRGENFYRALEEKKTIVTSFWLDDCMLVHGVQPLVITEKFGRKIQ
NPLHYPVKDYPITDMEGFNFTLSGFPKKEKTRLQYLIAAMGSKYSSNMTQENTHLLYKVA
AGAKYDTSIKWGIKRVDKNWLYDCARDWKLAPYPFVEENNSKKSSDPEGSNSLDSSSKKR
KLEDNDGSLESIIASNTKKNIFVNLDSSDQLKTYCDRVVIGKNNSKVLLVENNPTAQNED
EKIVDMDSFLNGRQNTLEFVEKNKHLITIIDSDKLNNLTTEKSSIVLGPIELSTQNQSLN
EKYQPKKTGLLYDARMCLHDGPIPETPVRISHIWNMIQEHNLLDECEIMKSREVTQQELA
LVHTEKYIDDFFEFKGQFNPTTSNHNLLRGIVQDNEHDIQINQFSLKAARLAAGGVIKLT
EKVLNGELENGMAIVRPPGHHAQTEDPMGFCFFNNAAVAARVAQQFKSVGRVAIIDFDIH
HGNGTQEIFEDDPSILYVSIHRFEQNYFPGTGSLEEVGIGKGEGYTLNIPLPPKDYKIPS
TATFGDSDYIAIFRQLIIPVCTEFAPDLVIVSAGFDAAKGDILGRRMSLTPSGYEHIIGM
LKQLAGGKIVLALEGGYKTDVTASCATASLRSLLNLPPSPISIKPPSKATNVAIRQVIIQ
HAQYWKCLKSFAEVFLNGDETPYGPLKSIRKHPRYVTVASNTASKPPSDESTPMIESNES
EQEIVVEQKTSMDNIFVVDYTGKGDFSSITEALNHIVNMKQTPVPISNSDNSNSFKQKIT
IQVRMGLYSNEKIRINTKMNHKLIHIIGEESEKQAHILYPIITLGEAGSIMLEAGSNIIF
ENIFFKATKEAKSADVVVTPQQNGGNPKSQGLHIRLDDGAECEIRNCKFSRFSTIATRNS
SLKIVNSEFRESEGIACEIRSSQAFIHNSKFVMNENAIVAEKSQLKITNNLITGSKKKSL
LMIQSTGTVQENEIIRNESSGIQLFKECKDVKITKNVIMGQKAAGIVVNAQCKATLMHNQ
IFDNTMAGIEVSNECNIDIIENEIYKGGICGILIATKSRGTVEKNRIYENAYAGLELRNS
NPTIRNNQIYSNRQSGVSIKGKDIDNTLIFQGNEILSNVYSGIEIRQGATPSIVGNRIFG
CAKQGIIVVEQSNPIIEKNEITENSDGIIVQKAYATIKENKIINNSNMGVKVRQFEADII
DNEISANGSFAIYGDECDRLTISKNKISAHKSVDDPIKIETNCKNSTPSNDNLILN
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaagacaacgtccacaaaccagaactaccaatccaatcgcagctgcaggtcta
aacatggaagatgtgccagaatttctcgaagggtgcacattctttgtggatccacttaca
catgaggaagctgaggccgaactctacagggaaattatcaaaaaacttggtggacaagtt
gtgaccatgtataagagtaatattacacacttgatggcaagtgttcagagaggagaaaat
ttctatagagcactcgaagaaaagaaaacgattgtaactagtttttggctcgatgattgt
atgcttgttcatggtgttcaacctctagtaattactgagaaatttggaaggaaaattcaa
aatccactccactatcccgtgaaagattatccaattacagatatggaaggatttaacttt
accttatctggttttccaaagaaagaaaaaacaagattgcaatatttaatagcagcaatg
ggaagcaaatattccagtaatatgacacaggaaaatactcatttactttacaaagttgca
gctggtgccaaatatgatacatcgatcaaatggggaattaagcgtgtagataagaattgg
ttatatgattgtgccagagattggaaattagctccatacccattcgttgaggaaaataat
tcaaagaaatcttcagatccagaaggctcgaactcattagattcttcatcgaaaaagaga
aaattagaggataatgatggatctctagagtctataattgcatccaacaccaaaaagaat
atttttgtgaatttggattcatctgatcaattgaaaacatattgtgatagagttgtaatt
ggaaaaaataattcaaaagttttactggttgaaaataatccaactgcacaaaacgaagat
gaaaagattgtagacatggactcattcttgaacggaagacaaaatactttagaatttgtg
gaaaagaacaagcacttgataacaatcattgactctgacaaattgaataatttaaccact
gaaaaatcttccatagtgttggggcctattgaattatcaactcaaaatcaatccctcaat
gaaaaatatcaaccaaagaaaacaggattattatatgatgctagaatgtgtcttcatgat
ggtccaataccagaaacaccagttcgtattagtcatatttggaatatgattcaagaacac
aacttgttggatgaatgtgaaattatgaagtcaagagaagtgacacaacaagaacttgct
ctggtccatacagaaaaatatattgatgatttctttgaatttaaaggacaattcaatcct
acaacttcaaaccataatttattgagaggtatcgtgcaagataacgagcatgatatccaa
attaatcaattcagtcttaaagcagcaagattagcagcaggtggtgtaattaaactaact
gagaaggtattgaatggagaattggaaaacggaatggctattgtacgtccacctggtcac
catgctcaaacagaagatccaatgggattctgtttctttaacaatgctgctgtagcagct
cgtgtagctcaacaattcaaatctgttggtagagtagccatcattgactttgacattcac
cacggtaatggtacacaggaaatttttgaggatgatccatctattctctatgtttccatt
cacagattcgagcaaaattatttccctggaactggttcattagaagaagttggtatcgga
aagggtgaaggttacacattgaacatacctctccctccaaaagactataagataccatcc
actgctacctttggtgattctgattatattgccattttcagacaattgattattcctgtt
tgtacagagtttgcacctgacttggtcattgtgtcagctggttttgatgctgccaagggt
gatattttgggaagaagaatgtccttaacaccaagtggatatgaacatattattggtatg
ttaaaacaattggcaggtggtaaaattgttttagctctcgaaggtggatataagacagat
gtaacagcatcatgtgcaactgcttctctgagaagtttattgaacttgcctccatctcca
atttctatcaaaccaccatcaaaggccaccaatgttgctatcagacaagtaattattcaa
catgcccaatattggaaatgtttgaaatcattcgctgaagttttcttgaatggagatgaa
actccttatggccctttgaagtctattcgtaagcatccaagatatgtaactgttgcctca
aatactgcctcaaaaccaccaagtgatgaatcaactccaatgattgaatcgaatgagagt
gaacaagaaattgttgttgaacaaaagacctctatggacaatatatttgtagttgactat
acaggaaagggagatttcagctccattacagaagccctcaaccatattgtcaatatgaaa
caaacaccagttccaatatcaaactctgacaattccaattcattcaaacaaaagattacc
attcaagtgcgaatgggtctttatagtaatgaaaaaattagaattaataccaaaatgaac
cataagctgatacatatcattggagaagaatcggaaaaacaagctcacatactttatcca
atcattacacttggagaagctggtagtatcatgttagaggctggctctaacattatattc
gagaatattttcttcaaggcaacaaaggaagcaaaaagtgctgatgttgttgttacacct
caacaaaatggaggaaatccaaaatcacaaggcttacatatcagacttgatgatggagct
gaatgtgaaattaggaattgtaaattcagccgattttccacaatagcaaccagaaattcc
agtctcaaaattgtcaattctgaattcagagaatctgaaggtattgcttgtgaaattaga
tcttctcaagcttttattcataacagcaaatttgttatgaacgaaaatgctattgttgct
gaaaaatctcaactcaagattactaacaatctcatcactggttcaaagaagaaatctctg
ctaatgattcaatctacaggaacagttcaagaaaatgaaattatcagaaatgaaagttca
ggtattcaactcttcaaggaatgtaaagatgtgaaaataaccaagaatgttattatgggc
caaaaagcagcaggtattgttgtgaatgcccaatgtaaagccactctcatgcataatcaa
atatttgataataccatggctggtatcgaagtatcaaatgaatgtaatatagatatcatt
gagaatgaaatttacaagggaggtatttgtggtattttgattgctaccaagagtagagga
actgttgaaaagaatagaatttatgaaaacgcctatgctggtcttgaactcagaaactct
aatccaaccattagaaacaatcaaatatactccaatcgtcagagtggtgtttcaattaag
ggaaaggatattgataatactctcattttccaaggaaatgaaattctttccaatgtctat
tctggtattgaaataagacaaggtgcaacaccttcaattgtaggcaatagaatatttgga
tgtgctaaacagggcataattgttgttgaacaatcaaatccaatcattgaaaagaatgaa
ataaccgagaatagtgatggtattattgttcaaaaagcatatgcaaccatcaaggaaaat
aagattattaacaattctaatatgggagtcaaagttagacaatttgaagctgatattatt
gataatgaaatatctgccaatggtagttttgctatttatggtgacgaatgtgatagattg
accatttcaaagaacaaaatatcagcacacaaatctgttgatgatccaatcaagattgaa
acgaattgtaaaaattcaaccccttccaatgataatctcattctaaattaa
DBGET
integrated database retrieval system
