Neodiprion lecontei (redheaded pine sawfly): 107227933
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Entry
107227933 CDS
T09006
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nlo01009
]
107227933
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107227933
04131 Membrane trafficking [BR:
nlo04131
]
107227933
03036 Chromosome and associated proteins [BR:
nlo03036
]
107227933
Enzymes [BR:
nlo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
107227933
Protein phosphatases and associated proteins [BR:
nlo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107227933
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107227933
Membrane trafficking [BR:
nlo04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107227933
Chromosome and associated proteins [BR:
nlo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
107227933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
NuDC
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
107227933
NCBI-ProteinID:
XP_015524718
EnsemblRapid:
ENSNLCG00000006360
UniProt:
A0A6J0CDB6
LinkDB
All DBs
Position
2:13094394..13104003
Genome browser
AA seq
1202 aa
AA seq
DB search
MTDTNASGNSLFTAARQLAESEIHLIQVIEGTRRSNRKVAKSNMTTTVKNVGGKKSAKSM
SARPSAALAAAKREAAERKLVHPKKSGNTILRDIYQKAMDAQTITRGETGLVWDRSMEEH
RCLWDSTYPECPERFTRILERCKDLGLISRCRVIEAREATHKEILLKHTQQHIDVLKETA
ECKDEDNLEKLASKYDSIYIHPSTYRLSLLATGSTIILLESICKKKVQNGMAIIRPPGHH
AMKAEYCGYCYFNNVAIAAQKMLNDNLASRILIVDWDVHHGQATQQMFYNDPRVVYFSIH
RYEHAEFWPNLRESNYDYVGEKKGEGYNFNVPLNKTGMTNADYIAIFQQLLLPMAYEFQP
DLVIVSAGYDAALGCLEFCPDIVIVSAGFDSAIGDEKGEMNVTPACYAHLLHPLMGLAGG
KVAVVLEGGYCLKSLAEGAALTLRTLLGDPCPMLHALEKPSRSIQESILNVIYAHKSYWS
CYQYQDTHSLNVPANSIEEKNNRHLPNIIFKNRELKPEIYDTRNCYPVPSAELAAEFDTK
LNLLIEFTNLNKAPNKVCIVYDDRMLCHTNIVDNTHPERPERISGIFSKHEEYGFLKRCH
LLQGRMATEEELSLAHSKTYIEMIKKTSSTKLKDLSKQASELKSVYLHTETWKSASVSAG
CLLQVVDSVLTGESQSGLAIVRPPGHHAERDTACGFCIFNNVAVAARYAIKNYNLKRVLI
VDWDVHHGNGTQSILETDPQILYASIHRYDNAGFFPNSKRANYTVTGTGPGEGYNVNIPW
NKKGMGDPEYIASFQQVIMPIAYQFNPELILVSAGFDACIGDPLGGCNVSPEVYGHLTHS
LSSLANGRVILSLEGGYNVSSISYASLMCTKALLGDPLVMIDLQQPPCSSAINSINNVLR
THKQYWPNLMFQKSLPKENVLPKLKTTTSRNKSEKRRGASRKTSESKIVFEDIESEKLEI
SLPIDKFSLNIVTDEEINKLQNEIENLKIKNFESDSLDFDSSGGHEIHTAIPKKYEESNE
ANYGKTCVNPNQNQGSDRRNDEGDQSGSRGGNNPNDLSGAAGAAGAGSLMQYLSENMQAL
VDGEMFAIVPLRDCPHLPTVEEVPADGIDVRAPCQECNSTAENWICLQCYTVHCARSINE
HAVTHGEETQHPMTLSFSDLSVWCYGCEAYIDNPRLYAARNAAHRSKFNQDLPWTYNNLE
IA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacaaatgccagtgggaacagcctatttactgccgctagacaattggcagag
agtgaaatacatctgatccaggtgatagaagggaccagaagaagtaacagaaaagttgca
aaaagcaacatgaccacaacagtgaaaaatgttggcggtaaaaaatcagccaaatcgatg
agtgccaggccttcggcggcgttggcggcagcaaagcgagaggcagcagagcgaaagctt
gtccacccgaaaaaatctggaaacactatcctcagagacatttaccagaaggccatggac
gcccagacaataacgcgtggcgaaacaggtcttgtttgggataggtcgatggaagaacac
cggtgtctttgggattcgacatatccggaatgccctgagaggttcacaaggattctggaa
agatgcaaagacttgggcttgatcagtcgctgcagggttatagaagcgcgtgaagccact
cataaagaaatattactcaaacacacacagcagcatattgatgtgctgaaagaaactgca
gaatgcaaagacgaggacaatcttgaaaagttggcttcaaaatatgactctatttacatt
catccttcgacttatagattatcgctgctggctactggctcaacgataattttactggaa
agcatatgtaaaaaaaaagtacaaaacgggatggctataatcaggccgccaggtcatcat
gcaatgaaggctgaatattgtggctactgttacttcaacaacgtagctattgctgcacag
aaaatgctcaatgataatttggcaagcagaatattaatcgttgactgggatgttcatcac
ggacaagcgacccaacaaatgttttacaatgatccgagagttgtttacttctccatccat
cgatacgaacatgccgagttttggccaaatcttagggaatcaaattacgattacgttgga
gagaaaaaaggggaaggttacaatttcaacgttcccctcaacaaaactggaatgacaaat
gctgactatatcgccatatttcaacagctccttcttccaatggcttatgagtttcaaccg
gaccttgttattgtctcagctggttacgacgcagctcttggctgccttgagttttgtcct
gacattgtcattgtgtctgccggattcgattcagcaattggcgatgagaagggtgaaatg
aacgtgacgccagcttgttacgcgcatcttttacatccattgatggggttagctggtggt
aaagttgcggttgtattggagggtgggtattgcctaaaatctctagcagaaggagctgcg
ttaactttaagaacattactgggagatccttgcccaatgttgcatgcgctagagaaaccg
tctcgcagcatacaggaatctattctgaatgtcatatatgcccacaaaagttattggagt
tgttaccaatatcaagacacgcacagcttaaatgttccagcaaatagtatagaggaaaag
aacaacagacacctgcccaacattatttttaaaaatcgggagcttaaaccagagatttac
gacacgcgaaattgttatccagttccgagtgcagagttagctgccgagtttgacaccaag
ttaaatttattgatcgaatttacaaatttgaacaaagcgcctaacaaagtttgcattgtt
tatgacgacagaatgctctgtcatacaaatattgtggataatacccacccagaaaggcct
gagagaatatcaggaattttttccaaacacgaagaatatggatttctcaaacgatgccat
ttgctccaaggaagaatggcgacggaggaagaattgtcactggctcattcgaagacgtat
attgagatgataaaaaaaacctcatcaacaaagctgaaagatctatctaagcaggcgtct
gaattaaagtcagtctatcttcacaccgagacgtggaagagcgcttctgtctctgccgga
tgtttgcttcaagttgtggatagcgtcttgaccggggagagccagtcgggcttggcaatc
gtcaggccgccggggcatcatgcagaacgagatacggcctgtggattctgcatatttaac
aacgtggctgtcgctgccagatatgctataaaaaattataacttgaagagggtgttgata
gtcgattgggacgttcaccatggcaatggaacccagagtattttggaaacagatcctcag
attctgtatgcatcgattcatcgttacgacaacgctggtttcttcccgaattcgaagcgg
gcgaattatacagtgactggaactggtccgggagaaggatataatgtgaatataccttgg
aacaaaaaagggatgggagacccagagtacatagcgagcttccaacaagtcatcatgccg
attgcataccaattcaatcctgaactaattctggtttccgcaggtttcgatgcctgcatt
ggggatcctttgggaggatgcaatgtttcaccggaagtgtacggtcatctcactcactcg
ctgagttctttggcaaacggtcgggttattctatcactcgaaggtggctacaacgtcagt
tcgatttcctacgcatcattaatgtgcacgaaagccctgcttggagatccattggtgatg
attgatctccaacaaccgccgtgttcaagtgccataaactcgatcaacaatgtgttacga
acgcacaagcaatactggccgaatttaatgttccaaaagtctttgccaaaagaaaatgtc
ctcccgaaactcaaaactaccacgtctcgcaataaatcagagaaacgtcgtggtgcttcc
agaaaaacgtccgagtctaagatcgtgtttgaagatatcgagtcggaaaaattggagatc
tctttgccaattgataaattcagcctgaacatagtcacggatgaggaaataaacaagcta
cagaatgagattgaaaatttaaagataaaaaatttcgaaagcgattctctcgattttgac
agttcaggaggacatgaaattcatacagcaatcccgaaaaagtatgaggaaagcaatgaa
gcaaattacggtaaaacctgtgtcaatcctaatcaaaatcaaggatctgatagacgaaat
gacgaaggtgatcaaagtggaagcagaggaggaaataatcctaatgatttgagcggtgct
gctggcgcagcaggagcaggtagcctgatgcagtatctttcggaaaacatgcaggcactg
gtagatggtgaaatgtttgctatcgttccgctacgggattgtcctcacttacccactgtc
gaagaagtgccagcggacgggatcgacgttcgagctccttgccaagagtgcaatagcact
gcagaaaactggatttgcctgcagtgttacacggtacattgtgcaagaagtatcaatgag
catgcggttactcatggcgaagagacgcagcatccgatgacgcttagcttcagcgatttg
tctgtctggtgttatggttgtgaagcgtacattgacaaccctcgactttacgcagcgaga
aacgcggcccatcgaagtaaatttaatcaggacttaccttggacttacaacaatttggaa
attgcttaa
DBGET
integrated database retrieval system
