Oryza glaberrima (African rice): 127771364
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Entry
127771364 CDS
T08853
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127771364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127771364
04121 Ubiquitin system [BR:
ogl04121
]
127771364
03036 Chromosome and associated proteins [BR:
ogl03036
]
127771364
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127771364
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
127771364
Ubiquitin system [BR:
ogl04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
127771364
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
127771364
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
127771364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4
zf-C3HC4_3
PTCB-BRCT
RTT107_BRCT_5
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_2
zf-RING_10
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
127771364
NCBI-ProteinID:
XP_052153219
LinkDB
All DBs
Position
4:complement(22548677..22552782)
Genome browser
AA seq
629 aa
AA seq
DB search
MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI
CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN
GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG
PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR
QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF
TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV
MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV
ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDERGACARTLKVLMAILAGK
WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG
HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAE
ELAATIGSRAVPHTCVLDSIASCTVQLTM
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggagagcttcaggaggttcctgaacccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcctgaagttgctcaacgcgcctaccatgctgccatgttac
cacacttcctgcagcaagtgtgctactacacggaccatggacggttacagctgcgcgatt
tgcaaatcagcttatcgttctcaagacctaaggcctgcctctcacctcgaggcaatagtg
aacatccacaggagcctaagctctacagtcagcagcatggtcactcagcaggaggctcaa
gctgatattcctgttgcaaagacatcatttcaaggaactccagaatcgggaaacagaaat
ggagcagagaaatctgatcaggtgaaatcatacaccccggttgcttctaaactggcatat
aaccagtcaactgggcttgcatatggaaatgtggacggcgtgaaagaaagaaatcctgca
ttggagactagaggtgcggctgatgtgactgctatgcccacaattcttgtgcagaaggga
ccctgccgatctcaatcttctgatggccctagggatctggattgcgacagcaatgacctt
gaaggagagctgataacaagcagatcatctcctcaaagtgtcttgaaaagagaaccaaat
acagcgaatgatgataatagagaattaaaaaggcaaaagtccactgatcaggatgataga
caaccagctgttgctggtgcttggaaatgtgaattttgtcactcttccaaaaccactgag
agtactggccctctgtcccattatctgcatggtgagccattagaggataaccaagcgtgg
aaaccaaacgttttgcatgttcatgagaaatgcattgaatgggcccctcaagcgttcttt
actggtgacattgcaaataacttggagcctgagttggcccgtgcttctaagatcaaatgc
agtgtttgtggactaaaaggtgcagcccttggctgccttgtcaagagctgccgcaagagc
tttcatgttccatgtgcccatgggatatcaggctgccgatgggatgatgagaactttgtt
atgctgtgtccttctcattcctcgaagaagttgccatgtgagagatcaaagtcaaaaaat
aagaagaccagcttgcagcgatcatcttccgatacaatgcttgatgacctgaactcacca
tctacaatccatatggatggactttggacagcttcaccttttctcactagtgaatgggtt
atatgtggatctgctctctctagtcaggagaaggaaatcttggaccagtttgagcaccaa
actggcatcactgtaactaacggttggaggtcgaatgtgactcatgtgattgctaatacg
gatgaacgtggggcatgtgccaggacactcaaggttctcatggccatactagctgggaaa
tgggttctgaatataaactggctgaaagcttgtatggaggctaaagaaccagtcccagaa
gagccttatgagatcagttctgatgttcatggctcctttgatggccctcgcatgggaaga
ctacgagcaatgcaaaatgcaccacatctgtttgcaggattgaccttttacttcagtggc
catttcatgcccaattacaaggttcaccttgaagatttgatcactgcagctgggggatca
atcttggacaaggctgatctctctagcacatccttgataatttacagcatggagccacca
caaggaagtgatcctgatacccttaatgaggtcatcagaaagaggaaggctgaggctgaa
gaattggcggcaacgattggctccagggctgttcctcatacatgtgttctggattctatt
gcatcatgcacagtgcaattgaccatgtga
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