Oryza glaberrima (African rice): 127779697
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Entry
127779697 CDS
T08853
Name
(RefSeq) histone deacetylase 15-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogl01009
]
127779697
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127779697
04131 Membrane trafficking [BR:
ogl04131
]
127779697
03036 Chromosome and associated proteins [BR:
ogl03036
]
127779697
Enzymes [BR:
ogl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
127779697
Protein phosphatases and associated proteins [BR:
ogl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127779697
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127779697
Membrane trafficking [BR:
ogl04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127779697
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
127779697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
127779697
NCBI-ProteinID:
XP_052162528
LinkDB
All DBs
Position
7:complement(3569614..3578314)
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AA seq
623 aa
AA seq
DB search
MASDMRSLNSQKGQSCGVSDQACHSKSKSGNDGKPSHAKANGVSSLSGSHNDEKILKENS
GACNLNSDHANPLSVDGTKVSTARSELIDSSGHDGCLHVKNESCMACDDLLQESDKEQPG
GTLEDLFSFNDEEDDDSDWEPSARLALSRWFCLNCTVPNMEGFTHCQNCDELKGSVVVGY
DAFKAHLAQAALLSADAALPSVSTAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLA
SAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFTSDTYANGHSACAAK
LAAGICADLANLIVSGRVRNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGAKK
VLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGSFYPGTGAAHEVGVMDGQGFSVNIP
WSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMAS
MLTACSQGKLLVILEGGYNLRSISSSATEVVKVLLGDSPVYDTDATEPSEEGIQTVLQVL
SIQQQFWPVLVPSFASVLALQRSVFSRYTTEVNKMKRKHAGGAGPFWWKWGSKRLLYEVL
FEGRCLRKTKDTGKEKLNDEAEP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgatatgaggtcactcaacagccaaaagggacagagttgtggagtttcagac
caagcttgccacagcaaaagcaaaagcggcaatgatggaaaaccatcacatgctaaagca
aatggagtttcctcgttgagcgggagtcataatgatgagaaaattttgaaagagaactct
ggagcatgcaatttaaattccgaccatgccaatcctttatcagtagatgggaccaaagtt
tctacagcaaggtcggaacttattgacagttcaggtcatgatggttgtctgcatgtcaag
aatgaaagctgtatggcttgtgatgatctgcttcaagagtctgacaaagaacagcctggg
ggtacactggaggatctattttcctttaatgatgaagaggatgatgacagtgactgggaa
ccctctgctcgccttgctttgagcaggtggttttgcttgaactgtacagtgccaaacatg
gaggggtttacacattgtcagaattgcgatgagcttaagggatctgtggtagttggatat
gatgctttcaaagctcatcttgcacaggcagctttgttatctgctgacgcagcgctgcca
tcagtatctacagctgtcggttttgatgaaagaatgttgctccatagtgagatagagatt
aaaccaaatccacatccagaaaggcctgaccgccttcgtgcaattgctgccagtcttgct
tctgcaggtatcttcccttcaaaatgtgtcatggtacctcctcgagaaatcactaaggaa
gaactcctaagggtccatacttcagatcacattgacagtgttgagcagacaaagaacatg
ctttacagttacttcacttcagatacctatgcaaatggacactcagcatgtgctgccaaa
cttgcagcagggatatgtgctgatcttgctaacttgatagtatctgggcgtgttcgcaat
ggatttgcaatggtgagacctcctggccatcatgcaggggtgaaacaagccatgggtttt
tgtcttcacaataacgcagcagtggctgcattagctgcacaaagagctggtgccaagaaa
gtcttaatagttgactgggatgtccaccatggcaatggaacacaggagatatttgatggg
gacaattctgtcttgtacatatcattacatcggcatgaggatggaagcttctaccctgga
actggggcagcacatgaggtgggagttatggatggccaaggattctcagtcaatatacct
tggagccgtggtggtgttggagacaatgactacatatttgcttttaagcatgtggtgctt
ccgatagctgcagaatttgctccagacatcaccatcatatctgcaggatttgatgcagcg
aggggtgaccctctgggttgttgtgatgtcactcctgctggatattctaggatggcgtcc
atgctaactgcttgttcacagggaaaattgttggttatacttgagggaggatacaatctt
cggtctatatcctcatcagctactgaagttgttaaggtcctacttggggatagtcctgtt
tatgatacagatgcaactgaaccatcagaggagggcatacagactgtcttacaagtcctg
agtatccagcagcaattttggccagttttagtcccatcctttgcatcagttctggcactg
cagcggtcggttttttccagatataccactgaagtaaacaagatgaaaaggaagcatgca
ggaggggcaggacccttctggtggaaatgggggagtaaaaggctactgtacgaagtgcta
tttgagggccgctgtctgaggaaaaccaaggatacaggcaaagaaaaattgaatgatgaa
gcagagccctaa
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