Oncorhynchus keta (chum salmon): 118393340
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Entry
118393340 CDS
T09424
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118393340 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118393340 (polb)
Enzymes [BR:
oke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
118393340 (polb)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
118393340 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
118393340 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_5
Cactin_mid
HHH_2
NTP_transf_2
DUF4806
Cdd1
Motif
Other DBs
NCBI-GeneID:
118393340
NCBI-ProteinID:
XP_035641821
EnsemblRapid:
ENSOKEG00005048268
LinkDB
All DBs
Position
14:complement(36222520..36229334)
Genome browser
AA seq
336 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLTELANYERNVNRAIHKYNAYRKAASVISKYPQKIKNGDEAK
KLDGVGKEIAKKIDEFLQTGTLKKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVK
TLEDLKKIEHKLNHHQQIGLKYFEEFEKRIPRSEMTKMETLILQELELVDTEYIGTICGS
YRRGAESSGDIDILLTHPNYTSVDEKQPKLLHAVVEHFESIGFITDTLSKGDTKYMGVCQ
LQQKDEDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHSLEKGFTLNEYTIR
PVGVTGMAGEPLMVDSEKDIFDYIQWKYREPKERSE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaggaaagcgccacaggaatccccaaacgagggaataacagactttcttacc
gaattggccaactatgagaggaatgtcaacagagctatacacaagtacaatgcctacagg
aaagcagcttcagtgatctccaagtacccccagaagatcaaaaatggggatgaggccaag
aaactggatggcgttggaaaagagattgctaagaagatagatgagtttttacaaacagga
acacttaagaagttagaaaagattcgtaatgatgacaccagctcctccatcaatttcctt
accagagtcactggtattggtcctgctgctgccagaaagttctttgacgagggagtgaag
actctggaagatctgaagaaaattgaacacaagctcaatcatcatcagcagattggactc
aagtactttgaggagtttgagaagaggattccacgatctgagatgacgaagatggagact
ctcattctgcaggagctggagttggtggatactgagtacattgggacaatctgtggaagc
tacaggagaggtgctgaatccagtggggatattgatatcttactaacccacccaaactac
acctctgtggatgagaaacagcccaaacttctccatgccgtggtggagcattttgaatcc
attgggttcattacagacacactgtccaaaggagacaccaaatacatgggagtctgccag
ctgcagcagaaggatgaagacgaggaggaatatcttcacagacgcattgatatcaggtta
attcctaaggaccagtattactgtggtgtgctgtatttcactggcagtgacatcttcaat
aagaacatgagaactcactctctggagaaaggcttcaccctcaacgagtataccatccgt
ccagtgggggtcactggtatggccggggaacctctgatggtggacagtgagaaggatatc
tttgactacatccaatggaagtacagagaacctaaagaacgcagcgagtga
DBGET
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