Oncorhynchus kisutch (coho salmon): 109871367
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Entry
109871367 CDS
T09179
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109871367 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109871367 (bard1)
04121 Ubiquitin system [BR:
oki04121
]
109871367 (bard1)
03036 Chromosome and associated proteins [BR:
oki03036
]
109871367 (bard1)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109871367 (bard1)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
109871367 (bard1)
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
109871367 (bard1)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
109871367 (bard1)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
109871367 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
109871367
NCBI-ProteinID:
XP_020317808
Ensembl:
ENSOKIG00005019912
LinkDB
All DBs
Position
LG26:complement(34200040..34227649)
Genome browser
AA seq
823 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGEGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAAVPLPEVGSGTVKAAPRHPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRATNYEKKKATKKTRNGGGVRKPAAGGGQKPTKHEETKQNVKTQRLEAINQ
QWGFGGAREGDVGEEEEQVTAEEREHRSSKRVSFQSPATLPVTAEPQKEDLSQGNTIILS
PSRSILKVVQPGENVPLSEDQDGPSPHTTPSQLDKISAKQHSKPNEEMTKKPDLPSPPKR
TPKRFCVEDKNISQCTPKKPKASPGQGRRPAVDRVALPAMHTSPSPAACPRQGRTSTRIS
REGEQQWGSSPCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKELLD
QGADPNLKDNAGWTPLHEACNLGHLGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNGHTG
IAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQAILLAASEGPHPVNSPLSPSPSLNKASE
GVRLEEQAVVLGSKLSQSQQTRLAKLGHLLGGKRADAFSCSVTHVVVPDGPMPTTLSTLL
GLLNGCWVLNFSWVEACLQADSWISESDYEAGAGPQRSRINRHSLLPPLLDGCFFYLMGS
FRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASLGSDQTLCTQYIIYDPQ
GSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELESDTPGV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcacggacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttttgttgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctc
ggggtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaggctggagagggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctccgattattct
gatgcccttcccattacaccaccagcacagtcagataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggcggtgcctctcccggaggttgggagtgggactgtgaaagctgctccaagacatcct
gagacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcctcctctcctcaaagggcgactaactatgaaaagaagaaggcgact
aagaagacgagaaatggtggtggtgtcaggaagcctgcagctgggggtgggcagaaacca
accaagcatgaagaaaccaagcagaatgtcaagacacagaggctggaggcaatcaaccag
cagtggggctttggcggagcgagagaaggagatgtcggagaggaagaagagcaggtcact
gcagaggaaagagagcacaggtctagtaaaagagtttccttccaaagtccagccaccttg
cctgtcactgcggagcctcagaaggaggatctctctcaggggaacaccataatcctcagc
cccagcagaagcatcctgaaggtggttcagccaggagagaacgtcccactctctgaggac
caggacggtccaagcccacacaccaccccttctcagctggataagatatctgcaaagcag
cactccaaaccaaatgaagaaatgactaaaaagcctgacctgccctcccctcctaagcgc
actcccaaaagattctgtgtggaagataaaaacatctcacagtgtaccccaaagaaaccc
aaggcatctcctggccagggtagacgtccggcagtggacagggttgcactcccagccatg
catacctcgccctcccccgctgcctgccccagacagggtcgaaccagcaccaggatatcc
agagaaggagagcagcagtggggcagtagtccgtgttcccccgcccccctggggaagaga
tccccgggcagactttcacagaacagcccagcggtagtgaagagaaaccacaagggggag
acacccctacacctggcagcaataaagggtgatgtggagacagtgaaggagctcctagac
caaggggctgaccccaacctgaaagacaatgctggatggacaccgctgcacgaggcatgt
aacctgggccacctgggtgtagtggaggtgttggtggagaggggaggcgtgctgttgaac
acaccaggctacaagaacgattctcctctacacgacgctgtcaggaacggacatactggc
attgccatgctactgctgcagcacggggcttcacagagcgtcttgaatatgtttggcctt
cgccctgtggactatgccgtgagcccagagatgcaggcaatccttctggcagcctctgaa
ggaccccacccagtcaactcacctctcagtccttcacccagcctcaataaggccagtgaa
ggtgtgagactggaggaacaggcagttgtactgggtagtaaactgtcccagtcccaacag
acccggctggccaaactgggacatctcctgggaggaaagagggcagacgccttctcctgc
tctgtcactcatgtggtggtaccagacgggccgatgcccaccaccctgtccactctcctt
ggcctcctgaacggctgctgggtcctcaactttagctgggtagaggcgtgcctgcaggca
gacagctggatctccgagagtgactatgaagcaggagcaggaccgcaacgcagccgcatt
aacagacacagcctgctgcccccgctgttggacggttgtttcttctacctcatgggctcc
ttcaggaagccccccagggacgagctcctccagctggtgagagaggcagggggccagatt
cttacccgacagcccaaaccagacagtgatgtgacccagaccctgtctgctgcagcctac
cacgcctctctgggctcagaccagaccctgtgtacccagtacatcatctatgatccccag
ggctcttacaggccacccagggtgaggttaggaaaggtgtggtcagctccatctacatgg
gttgtaaactgtatatcggccttccagctactgccagtgcctgagcttgaatcagacaca
cctggtgtgtaa
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