Oryzias latipes (Japanese medaka): 101163380
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Entry
101163380 CDS
T02443
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101163380 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101163380 (hdac6)
04131 Membrane trafficking [BR:
ola04131
]
101163380 (hdac6)
03036 Chromosome and associated proteins [BR:
ola03036
]
101163380 (hdac6)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
101163380 (hdac6)
Protein phosphatases and associated proteins [BR:
ola01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101163380 (hdac6)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
101163380 (hdac6)
Membrane trafficking [BR:
ola04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
101163380 (hdac6)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
101163380 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
101163380
NCBI-ProteinID:
XP_023812881
LinkDB
All DBs
Position
7:complement(34286415..34328405)
Genome browser
AA seq
1073 aa
AA seq
DB search
MQPGSEPPRSGSKSVRRSPRLSSQDSKDGIEERRRGSNLQEVKRRGRIERSYQKDEELSS
IMGALGLSGRSAARGTGLVYSEIFTRHQNLWEPSHPESPDRVRSIMEELERQQLLPCCVS
VQPRAATEEELLLVHTKDYIDLVKSTETMTQSELQTLCCKYDSVYLHPLSFKVCAIAAGS
VLQLVDEVMAFNLRNGFAVIRPPGHHAQTSEPNGFCVFNNVAIAARYACSRHAVSRVLIV
DWDVHHGQGLQYLFQEDPSILYFSIHRYEHASFWPHLPESDSSFVGSGHAIGRNINLPWN
KIGMSDADYISAFQHVLLPVAYEFQPQLVLVSAGFDAAAGDPKGEMNVSPQCFHTLTHML
MSLAEGRLVLVLEGGYNLKATAEGAAACVRALLGRACPPLNPPTGPSESAMHSISQTISA
LYVHWAFLQVLEGTSSAEADSTKTVSGHTSTTTVAPALAAATITGLVYDERMMEHVNLWD
RHHPEQPQRIFKIFSRHQQLGLVDRCQLIQSRLATEEELAMCHSLQHIQQMSATATMKPR
DLHRLGDEFVSIFISNQSFQSAQLAAGSCFAAVEHMLNGQVNNAVAIVRPPGHHAEMDFP
CGFCLFNTTALTARHAQKVSHDLQILILDWDVHHGNGTQHIFEDDNSVLYISLHRYDNGA
FFPSSKDGAPENVGVAKGAGYNVNLAWSGGRMGDSDYLAAFHQVVMPIATEFNPGLVLVS
AGFDAAQGDPLGGYHVTPEGYAHFTHMLMSLAGGRVLFILEGGYNLKSISDSMAACTSVL
LGDPPPSLATPLPPPHHCAAVAINKVIQHHAPYWKSLRVQIPESVRAFLPSPKHRGKHGP
KGRVRKSEQNSMGRLESSIVQSGLEQLMQGLAGLDISQSPANQSLSAVSLSVRSESDPHS
DTVEEMRVLKGDSQSRIALPQTVAEVTPEMAIPKDKPQLEGACGWAGCQKDTGLMCAEET
SLYVVDPLPWCSHLGSVKPLPPSGIDVSRPCQDCGSEAENWICLTCYQVFCGRYVNEHMV
AHGKEVEHPMVLSFSDLSVWCYMCESYIHHQVLFQAKNAAHFSKFGEESPPWK
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctgggtcagaacctccacgatctggatccaagtcggtcagaaggtctccacgt
ctgtcatcgcaggacagcaaagatggaatagaggaaagaagaagaggaagcaatctgcaa
gaagtgaagaggagaggaagaattgagagaagctatcagaaggacgaggagctaagtagt
atcatgggggcactgggtctttccggcagatctgcagccagaggaaccggtctggtttac
tcggagatctttactcggcaccaaaacctgtgggagcccagtcatccagagagtccagac
agagtcaggtccatcatggaggagctggagcggcagcagctgctgccttgctgcgtcagt
gttcagcctcgggcagctacagaggaggagctgctgctcgtacacacgaaggattatata
gacctggtcaagtccacagagaccatgacacagtctgagctgcagaccctttgttgcaaa
tacgactctgtctatctgcatcctctgtccttcaaggtatgtgcaatagcagccggttct
gtcctgcagctggttgatgaggtcatggcctttaatctcaggaatggatttgctgtcatc
aggcccccaggtcatcacgctcagaccagcgagcccaacggtttctgtgtgttcaacaat
gtggcaattgcagctcgctacgcctgcagccgtcacgccgtcagcagggttttaattgtg
gactgggatgttcaccatgggcagggtcttcagtaccttttccaggaggatcccagtatc
ttgtacttcagcattcataggtacgaacacgcctccttctggcctcacctgccagagtcc
gacagcagctttgttggaagtggacatgctataggcagaaacattaaccttccctggaac
aagattgggatgagcgacgctgattacatctctgctttccagcatgtactgctgcctgta
gcctatgagtttcagccccagctggttctggtctctgctggatttgatgctgcagctgga
gatcctaagggggaaatgaatgtgagtcctcagtgctttcacacactgacacacatgctg
atgagtctggctgaaggtcgactggttctcgttctagagggaggttacaacctgaaggcg
acagcagaaggcgctgcagcctgtgtccgagctttgctgggtagagcctgccctcctttg
aatccccccactggaccctctgaaagcgccatgcattctatctctcaaaccatctctgca
ctgtacgttcactgggccttcctccaagttttggagggaacttcctccgctgaggctgac
tcaaccaagacagtttcaggtcacacaagcacaacaactgtggcccctgcccttgctgct
gccactatcacaggcttggtctatgatgagagaatgatggagcacgtaaatttgtgggac
agacaccacccagagcagccgcaaaggatcttcaagatattctctaggcaccagcagctg
ggattagtcgaccgctgccagctaatacagagtcgcttggcaacagaggaggagctggct
atgtgtcacagtttgcagcatatccaacagatgagtgcaacggcaaccatgaagcccaga
gaccttcacaggctgggggatgagtttgtctccatcttcatcagcaatcagagcttccag
tccgcccagctagctgctggaagctgctttgctgctgtggagcatatgttaaacggacag
gtaaataatgccgtggccatcgtccgtcctccaggccatcacgctgagatggactttccc
tgcggcttttgcctcttcaacacaacagcactcactgctcgccatgcacagaaagtctcc
catgatctacaaatcttgattctggactgggatgttcatcacgggaacgggacgcagcac
atatttgaggacgataacagtgttctttatatctccctccaccgctatgacaatggggct
ttctttccgtcatcaaaagacggtgcccctgaaaatgtgggtgtggccaaaggtgccggg
tataatgtaaatttggcgtggagtggagggcgaatgggggactctgactacctggcagcg
tttcaccaagttgtcatgccaatcgcaacagagtttaaccccggcctggttctggtgtcc
gccgggtttgatgcagctcagggggatccacttggtggatatcacgtgactccagaagga
tacgctcacttcacgcacatgctgatgtcacttgctggagggcgggtcctattcatcctg
gagggaggctacaacctcaaatccatttctgactccatggctgcctgcaccagtgtgctg
ctgggagaccctcccccatcactggcgacccccctccccccccctcaccactgcgctgca
gtagccatcaacaaggtcatccagcaccatgccccctactggaagagcctgagggttcag
attccagagtcagtgcgagcattcctgccatccccaaagcatcgtgggaaacatggtcct
aaaggaagagtcaggaagtcggagcagaacagcatgggcagacttgagtcctctatagtg
cagagtggcctggagcagctcatgcagggattggccggtctggacatcagtcaaagccca
gcaaatcagtcactttctgccgtctccctctcagtcagatctgagtccgacccacattca
gatacggttgaagaaatgcgggtgctaaaaggtgacagccagtcaaggatagcactacct
cagactgttgctgaggtaacacctgagatggccataccaaaagacaagccacagctggaa
ggagcgtgtggttgggcggggtgtcagaaagacacaggactgatgtgtgcagaagagaca
tctctgtatgtggttgatccactgccctggtgctcccacctgggttctgtaaagcccctc
cctccctcaggtatagacgtgtcacggccctgccaggactgtggatctgaggcagagaac
tggatttgcctcacgtgctaccaggttttctgtgggcgctacgtgaacgagcacatggtg
gctcacggcaaagaggtggagcaccccatggttctgagcttctctgatctttctgtgtgg
tgttacatgtgtgagtcctacatccaccaccaggttctgttccaggccaaaaacgctgcc
cacttctccaagtttggagaagaaagccctccatggaaatga
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