Oryzias latipes (Japanese medaka): 101165605
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Entry
101165605 CDS
T02443
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101165605 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101165605 (bard1)
04121 Ubiquitin system [BR:
ola04121
]
101165605 (bard1)
03036 Chromosome and associated proteins [BR:
ola03036
]
101165605 (bard1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101165605 (bard1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101165605 (bard1)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
101165605 (bard1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101165605 (bard1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101165605 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
101165605
NCBI-ProteinID:
XP_004081904
UniProt:
H2MMZ2
LinkDB
All DBs
Position
21:complement(19171134..19195500)
Genome browser
AA seq
798 aa
AA seq
DB search
MEDNVVEAQDWKSTKEALTNFRWLLLCSKCSNLMEEPVCMGMCEHMLCRSCAGPRAGDGC
AVCLSPAWVKDIQINRQLSSIIQLFCGLESLLNPTKPDSIGGTQTEREAAVFKHKKNFKI
WFSPRSRKVRCKVEKPSDVPVPSNSGETVAPQLEAPAAQSQDLSVFNFTSSSQDSSSSQR
CNLENQKKKKKQSLKRNANSSHSQGQRTSTTTREQTRQNNKKKRLEAINQQWGITEAEHA
SSELEQPCANMSRRSSKRVSFIGPAVTCEELPAKVLKENTELDPAQNTVGDDVSEGSSST
PRCQTQVAQGSVGQPKIACTNEPSPNEDALCPSNMTTPDKCSKGVEKKKSLLENTPRRPR
TSTSQRRKSLVEISPTVNNPPSLATPRREKSTKLGKQRDAAGLTLTERHSKSPCSPRSSG
RPNSGSPAFMKRNYKGETPLHLAAIKGDVEAVKELLDQGADPNQKDNAGWTPLHEACNLG
HLTVVEVLATRGALLNTPGYENDSPLHDAVRNGHSAIVKVLLQLGASQNVLNLHGKRPAD
YAVSPEMLNIFQEASEGIQRANSHTSPSPSASLSVVSESVKGDQTVVLLASKLSQREQHQ
LAKLEELLEGRMSDTFSASVSHVVVPEGPIPTNSSTLLALLAGCWVVNYSWVEACLQAGR
RLPEAEHEAGEGPRRSRINRCSLLPPLFDGCFFFLLGSFKAPDKDELAKLLREGGGQLLS
RQPKPDSDVTQTLSAAAYHAVPGSDQALCTQYIIYDPESSYKPAVVRRGKVWSAPCTWVI
DCITAFSLLPVPEPQIVG
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaacgtcgtcgaggcgcaggattggaaaagtactaaagaggctcttaccaac
ttccggtggcttctgctttgttccaaatgttcaaatttaatggaagagcctgtgtgtatg
ggcatgtgcgagcatatgctgtgcaggtcctgtgccggccccagagcaggggatggctgc
gcggtgtgccttagccctgcgtgggtgaaggacatccaaatcaacaggcagctcagcagc
attatacagctcttttgcggtttggagtccctgctcaatcccacaaaaccagactctatt
ggtgggacccaaacagaaagggaggcagctgtctttaaacacaagaaaaacttcaagata
tggtttagtccacgcagtcgcaaggtgcgctgcaaggtggagaaaccctcagacgtccca
gtgcctagcaactctggtgaaaccgtcgccccacagctggaagcccctgcagctcaaagc
caagacctgtcggtgtttaattttacatcatcctctcaagactcttcttcttctcaaaga
tgcaaccttgaaaaccaaaagaagaagaagaagcagtcattgaagagaaatgccaacagc
agccattcacaggggcagagaaccagcacaaccacgcgtgagcagaccaggcagaacaat
aaaaagaagaggctggaggccataaaccagcagtggggaattacagaggcagagcatgca
tcctccgaactggagcagccatgtgctaacatgtcaagaaggtccagtaaaagggtttct
ttcataggtcctgccgtcacctgtgaagagcttccagcgaaagtgctaaaagagaatact
gaactagatcctgcccaaaacacagtgggagatgatgtttcagagggcagcagcagtaca
ccgaggtgccaaactcaggttgctcagggcagtgttggtcagccaaagatagcatgtaca
aatgagcccagtcccaatgaagatgctctctgtccgagcaacatgactactcctgataaa
tgctctaaaggagtagaaaagaaaaaaagccttttggaaaacacaccaagaagaccgaga
acctccaccagccaacgaagaaagtcactagttgagatctctccaactgtcaataatcct
ccatctttagctacaccccggagagagaagagcacaaaactcggcaaacaaagggatgcg
gcaggcctgactttaacagaaagacacagtaaatccccctgcagtccgagatcatctggt
cgaccaaattctggaagccctgcatttatgaagaggaactacaagggagagaccccactg
catctagcagcaataaagggagatgtagaggctgtcaaggagctgctggaccagggagct
gacccaaaccaaaaagataatgctgggtggacacccctgcatgaggcatgtaacttgggt
cacctgactgttgttgaggtgctggccacaagaggagccctgctgaacacaccaggctat
gaaaatgactctccactccacgatgctgtcaggaacggacactcggccatcgtcaaagtg
ctgttgcagctcggagcctcgcagaacgttcttaatctgcatggaaagcggcctgcagat
tatgcagtgagcccagagatgctgaatattttccaagaggcctctgaaggaatccagcgt
gccaattctcatacatctcccagcccatcagccagtctctctgtggtgagtgaatctgtg
aaaggtgatcaaactgtggtgcttttggcttccaagctgtcacagcgagagcaacaccag
ctggccaaactggaagagctgctggaagggagaatgtctgacaccttctctgcctcagta
agccatgtcgtggtgccagaaggaccgatacccacaaactcctccacccttctggctctt
ctggctggttgctgggttgtcaactacagctgggtggaggcatgtttgcaggcggggagg
cggctgcctgaagccgagcatgaagcaggagaaggtcctcggcgcagtcgcatcaacaga
tgcagcttgctccctcccctcttcgacggatgcttcttcttcctcctgggctcctttaag
gcaccagacaaagacgagctcgccaaactgctgcgggaaggaggaggccaactcctgagc
cggcagcccaagccagacagcgatgtgactcagactctgagtgctgcagcgtaccacgcg
gttcctggttccgaccaggctctgtgcacccagtacatcatatatgacccagagagctct
tataagcctgcggtggtccggcgggggaaggtttggtctgctccctgcacctgggtcata
gactgtattacagcattctcccttctccctgttccagagcctcagatagtgggctaa
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