Oryza sativa japonica (Japanese rice) (RefSeq): 4342472
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Entry
4342472 CDS
T01015
Name
(RefSeq) histone deacetylase 15
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
osa01009
]
4342472
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4342472
04131 Membrane trafficking [BR:
osa04131
]
4342472
03036 Chromosome and associated proteins [BR:
osa03036
]
4342472
Enzymes [BR:
osa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
4342472
Protein phosphatases and associated proteins [BR:
osa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
4342472
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
4342472
Membrane trafficking [BR:
osa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
4342472
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
4342472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
4342472
NCBI-ProteinID:
XP_015647003
UniProt:
A3BGV4
Q0D8F2
LinkDB
All DBs
Position
7:complement(3435959..3444792)
Genome browser
AA seq
623 aa
AA seq
DB search
MASDMRSLNSQKGQSCGVSDQACHSKSKSGNDGKPSHAKANGVSSLSGSHNDEKILKENS
GACNLNSDHANPLSVDGTKVSTARSELIDSSGHDGCLHVKNESCMACDDLLQESDKEQPG
GTLEDLFSFNDEEDDDSDWEPSARLALSRWFCLNCTVPNMEGFTHCQNCDELKGSVVVGY
DAFKAHLAQAALLSADAALPSVSTAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLA
AAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFTSDTYANGHSACAAK
LAAGICADLANLIVSGRVRNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGAKK
VLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGSFYPGTGAANEVGVMDGQGFSVNIP
WSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMAS
MLTACSQGKLLVILEGGYNLRSISSSATEVVKVLLGDSPVYDTDATEPSEEGIQTVLQVL
SIQQQFWPVLVPSFASVLALQRSVFSRYTTEVNKMKRKHAGGAGPFWWKWGSKRLLYEVL
FEGRCLRKTKDTGKEKLNDEAEP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgatatgaggtcactcaacagccaaaagggacagagttgtggagtttcagac
caagcttgccacagcaaaagcaaaagcggcaatgatggaaaaccatcacatgctaaagca
aatggagtttcctcgttgagcgggagtcataatgatgagaaaattttgaaagagaactct
ggagcatgcaatttaaattccgaccatgccaatcctttatcagtagatgggaccaaagtt
tctacagcaaggtcggaacttattgacagttcaggccatgatggttgtctgcatgtcaag
aatgaaagctgtatggcttgtgatgatctgcttcaagagtctgacaaagaacagcctggg
ggtacactggaggatctattttcctttaatgatgaagaggatgatgacagtgactgggaa
ccctctgctcgccttgctttgagcaggtggttttgcttgaactgtacagtgccaaacatg
gaggggtttacacattgtcagaattgcgatgagcttaagggatctgtggtagttggatat
gatgctttcaaagctcatcttgcacaggcagctttgttatctgctgacgcagcgctgcca
tcagtatctacagctgtcggttttgatgaaagaatgttgctccatagtgagatagagatt
aaaccaaatccacatccagaaaggcctgaccgccttcgtgcaatcgctgccagtcttgct
gctgcaggtatcttcccttcaaaatgtgtcatggtacctcctcgagaaatcactaaggaa
gaactcctaagggtccatacttcagatcacattgacagtgttgagcagacaaagaacatg
ctttacagttacttcacttcagatacctatgcaaatggacactcagcatgtgctgccaaa
cttgcagcagggatatgtgctgatcttgctaacttgatagtatctgggcgtgttcgcaat
ggatttgcaatggtgagacctcctggccatcatgcaggggtgaaacaagccatgggtttt
tgtcttcacaataatgcagcagtggctgcattagctgcacaaagagctggtgccaagaaa
gtcttaatagttgactgggatgtccaccatggcaatggaacacaggagatatttgatggg
gacaattctgtcttgtacatatcattacatcggcatgaggatggaagcttctaccctgga
actggggcagcaaatgaggtgggagttatggatggccaaggattctcagtcaatatacct
tggagccgtggtggtgttggagacaatgactacatatttgcttttaagcatgtggtgctt
ccgatagctgcagaatttgctccagacatcaccatcatatctgcaggatttgatgcagcg
aggggtgaccctctgggttgttgtgatgtcacacctgctggatattctaggatggcgtcc
atgctaactgcttgttcacagggaaaattgttggttatacttgagggaggatacaatctt
cggtctatatcctcatcagctactgaagttgttaaggtcctacttggggatagtcctgtt
tatgatacagatgcaactgaaccatcagaggagggcatacagactgtcttacaagtcctg
agtatccagcagcaattttggccagttttagttccatcctttgcatcagttctggcactg
cagcggtcggttttttccagatataccactgaagtaaacaagatgaaaaggaagcatgca
ggaggggcaggacccttctggtggaaatgggggagtaaaaggctactgtacgaagtgcta
tttgagggccgctgtctgaggaaaaccaaggatacaggcaaagaaaaattgaatgatgaa
gcagagccctaa
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