Populus alba (white poplar): 118056826
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Entry
118056826 CDS
T07314
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
palz
Populus alba (white poplar)
Pathway
palz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118056826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118056826
04121 Ubiquitin system [BR:
palz04121
]
118056826
03036 Chromosome and associated proteins [BR:
palz03036
]
118056826
03400 DNA repair and recombination proteins [BR:
palz03400
]
118056826
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
118056826
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
118056826
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
118056826
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
118056826
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-HC5HC2H_2
RTT107_BRCT_5
zf-RING_10
zf-rbx1
zf-Nse
Motif
Other DBs
NCBI-GeneID:
118056826
NCBI-ProteinID:
XP_034925083
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MIRSAVSASSSHYQISSQRERRASYKMGDPTHLEKMGRELKCPICLSLLDTAVSLTCNHV
FCNSCIVKSMKSGSDCPVCKVPYRRREVRAAPHMDNLVSIYKNMEIASGFNIFVTQNPPP
STKLSDVQKQVGDDTDCGREDIGWICQDMLEEQLNISRQKVSRKLDESNMELCGPITSKP
SFPTKKRVQVPQCSLSGTSAQPEKLQTGSRELKKDDFKNDSSVSGKNPVVDEKGERMLLP
FFWLRDEDGEKSSQHTDVDQLLDITPPNVPTFSDIKDSDDENPPESSSKGAVCGNESHVA
DFFDSEMFEWTQRACSPEIFSSPEKMQVEKTTEMDGIRESKSETPPLDANTNEERSDESK
NCTDTKPRMGISEDMLANLSSPIVKSANYQIGRNTSNKRGRNAKDTTLRNCARKNADKGG
RLKGENVSSVSVRENLDQADENTVTDQLPISLDKKQGRSNLKRKKNGKVSRKINLRCKER
KLDSVEINMIKEVHSIHNQMDKDEHAHDYFLPVPLVEDKKPSEIKGKPGKQGEEVKSALC
PEHNQDLKCKKNMEVSLDGIIEDGLVSGHQEGADNVFAEEAQSTENITGNSARATESVEK
VQASLNTRILDDLATLRDHCQENGAAVLNCKLNYNIQCAFCLSSEVSEASGEMIHYNNGI
PVAADYNGGSRVIHSHKNCAEWAPNVYFEGDNAINLEAELARSRRIKCCCCGLKGAALGC
YEKSCRKSFHVPCAKLTHQCRWDTENFVILCPLHASCKLPNESKQSQERRKNCISKGQTP
RQYNQVTFKHDINMHKSRKSCLTHDKLVLCCSALTVGEKEIVSEFESLSGVTVLKNWDSS
VTHVIASTDENGTCRRTLKVLMGILKGKWIVNIEWVKACIKAMKIVEEMRYEITADVHGI
RDGPRNGRLRVLNKQPNIFEGFKFYFMGDFIPSYKGYIQDLLVAGGGTILHRKPISGAQG
TLLLDSKPPTFIIYSLEMPDKCAPSKKNMILNRRQSDAEALASSTGAKAVSNKWVLNSIA
ACKLQSLAQ
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgataaggagcgccgtcagtgcgtcttcttctcattatcaaatttcaagccagagagaa
aggcgagcgagttacaaaatgggagatccaactcacctcgagaaaatgggcagagagctc
aagtgccccatctgcttaagtcttcttgacactgcagtctcgcttacatgcaatcatgtt
ttctgcaattcatgtattgtgaaatcgatgaaatcaggttccgattgtccagtctgtaaa
gtgccataccggcgtagagaggttcgcgctgctcctcatatggataacttggtcagcatt
tacaaaaacatggaaattgcttcaggattcaatatattcgtcactcagaatccaccacca
tcaactaaattatcagatgtacaaaagcaagtaggagacgatacggactgtggcagagaa
gatattggttggatttgtcaggatatgttagaggagcaacttaatatatccagacaaaaa
gtttcaaggaaacttgatgaatccaacatggaattatgtggtcccattacttcgaaacct
tcgtttccaaccaagaaaagagttcaggtaccacaatgctctctttcaggcacatcggca
caacctgagaagctacaaactggatcaagagaattaaaaaaagatgactttaaaaatgat
tcatcagtctcagggaagaaccctgttgtcgatgaaaagggagagcgcatgctattgcct
ttcttctggttgagagatgaagatggagagaagtcaagtcagcacactgatgtagatcag
cttctggatatcacaccaccaaatgttcctactttcagtgatatcaaagactcagatgac
gaaaacccccctgaatcatcctcgaaaggggcagtgtgtggcaacgaatcacatgttgca
gatttttttgacagtgagatgtttgaatggacgcaacgagcttgctctcctgagattttt
tcaagcccagaaaagatgcaggttgaaaaaacaacggaaatggatggaattcgagagagt
aagtcagaaacacccccactggatgcaaatacaaatgaagaacgtagtgatgaaagcaaa
aactgtactgataccaaaccgcgaatgggtatttctgaagacatgctggccaatctatcc
tctccaatagttaaaagtgcaaattaccaaatcgggcgtaatacttccaataagagaggc
aggaatgctaaggacacaacgttaaggaattgtgctcgaaagaatgcagataagggtggt
aggttgaaaggagagaatgtttcttctgtttcagttagagaaaatttggaccaggctgat
gaaaacacggttactgatcagctgcctatttcattggataagaaacaaggtcgcagtaat
cttaaaaggaagaagaatggaaaagtgagtagaaagatcaatctccggtgcaaggaacga
aagctggattctgttgagataaacatgattaaagaagtccattcaatacacaaccaaatg
gacaaagatgaacacgcccatgattactttttacccgtccctctggttgaagataaaaaa
ccctcagaaatcaaggggaaacctggcaaacaaggggaagaagtcaagtctgcattgtgt
ccagaacataatcaagacttaaaatgtaagaaaaacatggaagtttcattagatggtatc
atagaagatggattagtcagtggccatcaagaaggtgctgacaatgtctttgcagaggaa
gctcagtccactgaaaatattactggcaactctgcaagggcaactgaatctgttgagaag
gttcaagccagtcttaatactcgaattcttgatgatttggcaacattaagggatcattgc
caagaaaatggagcggccgtgcttaactgcaagcttaattataatattcaatgtgctttc
tgtctttcttcagaagtctcagaggcttcaggggagatgatccactacaacaatggcata
cctgtggcggcagattataatggtggatccagggtcatacactctcataaaaactgtgct
gagtgggcacctaatgtctacttcgagggtgataatgcaattaaccttgaagctgaatta
gctagaagtcggagaattaagtgttgctgctgtggactcaaaggtgctgctcttggatgt
tacgagaagagttgtcgcaagagtttccatgttccttgcgcaaagttgacccaccaatgt
cgatgggatactgaaaactttgtcatcttatgccctcttcatgcttcttgtaagttgccc
aatgaaagcaaacaatctcaagagaggagaaaaaactgcatttcaaaaggacaaacacca
aggcaatacaatcaagttactttcaaacatgacatcaatatgcataaaagtcggaaatca
tgtttaacacatgacaagttggttctttgctgttcggctctcacagttggagaaaaggaa
attgtttctgagtttgagagtttatctggagttacagtcttgaagaattgggattcaagt
gtcactcatgtcattgcatcaacagatgaaaatggaacatgcagaagaacccttaaagtt
ttgatgggtatcttgaaggggaagtggatagtgaacattgaatgggtcaaggcttgtatt
aaagccatgaaaattgttgaagagatgcgatatgaaattactgctgatgttcacggaatc
agggatggtccacgaaatggaagactaagagtcctgaacaagcaaccaaacatttttgag
ggatttaagttctatttcatgggagattttattccttcttacaagggatatatacaagat
cttttagttgctggtggaggaacaattctgcacagaaaacccatttcgggagcccaggga
accttgttactggactctaaacctccaactttcataatatacagcctcgagatgcctgat
aaatgtgctcctagcaagaagaatatgatattaaaccgaaggcagtctgatgcagaagct
ctagctagttcaaccggagcaaaggcggtaagcaataaatgggttttgaactctatagca
gcctgcaaattgcaaagtttggctcaataa
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