KEGG   PATHWAY: dhk00270
Entry
dhk00270                    Pathway                                
Name
Cysteine and methionine metabolism - Delftia sp. HK171
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
dhk00270  Cysteine and methionine metabolism
dhk00270

Module
dhk_M00021  Cysteine biosynthesis, serine => cysteine [PATH:dhk00270]
Other DBs
GO: 0006534 0006555
Organism
Delftia sp. HK171 [GN:dhk]
Gene
BO996_27110  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
BO996_10750  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BO996_07255  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
BO996_23775  cysteine synthase [KO:K01738] [EC:2.5.1.47]
BO996_27040  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
BO996_01585  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
BO996_18480  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
BO996_02150  5-methyltetrahydrofolate--homocysteine methyltransferase [KO:K00548] [EC:2.1.1.13]
BO996_12015  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
BO996_26110  methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
BO996_03760  spermidine synthase [KO:K00797] [EC:2.5.1.16]
BO996_21835  spermidine synthase [KO:K00797] [EC:2.5.1.16]
BO996_25085  spermidine synthase [KO:K00797] [EC:2.5.1.16]
BO996_04845  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
BO996_16275  laccase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
BO996_02350  phosphatase [KO:K08966] [EC:3.1.3.87]
BO996_14675  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
BO996_10105  aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
BO996_18315  aromatic amino acid aminotransferase [KO:K00832] [EC:2.6.1.57]
BO996_27795  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
BO996_11755  aspartate kinase [KO:K00928] [EC:2.7.2.4]
BO996_24195  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
BO996_24095  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
BO996_03065  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
BO996_22765  O-acetylhomoserine aminocarboxypropyltransferase [KO:K01740] [EC:2.5.1.49]
BO996_22060  O-acetylhomoserine aminocarboxypropyltransferase [KO:K01740] [EC:2.5.1.49]
BO996_26210  O-acetylhomoserine aminocarboxypropyltransferase [KO:K01740] [EC:2.5.1.49]
BO996_21740  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
BO996_01390  branched chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
BO996_03300  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
BO996_11550  glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
BO996_03315  glutathione synthase [KO:K01920] [EC:6.3.2.3]
BO996_27015  aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
BO996_12065  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BO996_10435  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BO996_23750  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BO996_17860  aspartate 4-decarboxylase [KO:K09758] [EC:4.1.1.12]
BO996_20365  aspartate/glutamate racemase [KO:K25316] [EC:5.1.1.10]
BO996_11345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BO996_16210  serine dehydratase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
BO996_10310  cysteine synthase B [KO:K12339] [EC:2.5.1.144]
BO996_27155  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BO996_07035  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BO996_16055  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BO996_19070  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BO996_01210  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BO996_21440  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
dhk00010  Glycolysis / Gluconeogenesis
dhk00250  Alanine, aspartate and glutamate metabolism
dhk00260  Glycine, serine and threonine metabolism
dhk00290  Valine, leucine and isoleucine biosynthesis
dhk00430  Taurine and hypotaurine metabolism
dhk00480  Glutathione metabolism
dhk00620  Pyruvate metabolism
dhk00640  Propanoate metabolism
dhk00770  Pantothenate and CoA biosynthesis
dhk00900  Terpenoid backbone biosynthesis
dhk00920  Sulfur metabolism
KO pathway
ko00270   
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