KEGG   PATHWAY: eju00020
Entry
eju00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Eumetopias jubatus (Steller sea lion)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eju00020  Citrate cycle (TCA cycle)
eju00020

Module
eju_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eju00020]
eju_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eju00020]
eju_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eju00020]
eju_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eju00020]
eju_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eju00020]
Other DBs
GO: 0006099
Organism
Eumetopias jubatus (Steller sea lion) [GN:eju]
Gene
114214865  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
114201339  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
114218168  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
114218348  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
114223260  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
114215995  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
114201256  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
114201607  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
114220021  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
114220675  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
114202279  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
114205382  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
114201521  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
114201700  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
114223433  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
114211683  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
114214603  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
114198554  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
114213172  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
114221094  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
114199177  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
114211322  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
114215677  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
114198302  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
114199971  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
114210027  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
114211982  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
114214464  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
114220319  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
114217895  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
114197938  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
114220134  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
114223582  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
114214674  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
114211315  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eju00010  Glycolysis / Gluconeogenesis
eju00053  Ascorbate and aldarate metabolism
eju00061  Fatty acid biosynthesis
eju00062  Fatty acid elongation
eju00071  Fatty acid degradation
eju00190  Oxidative phosphorylation
eju00220  Arginine biosynthesis
eju00250  Alanine, aspartate and glutamate metabolism
eju00280  Valine, leucine and isoleucine degradation
eju00350  Tyrosine metabolism
eju00470  D-Amino acid metabolism
eju00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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