KEGG   PATHWAY: gas00020
Entry
gas00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gracilinanus agilis (agile gracile opossum)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gas00020  Citrate cycle (TCA cycle)
gas00020

Module
gas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gas00020]
gas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gas00020]
gas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gas00020]
gas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gas00020]
gas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gas00020]
Other DBs
GO: 0006099
Organism
Gracilinanus agilis (agile gracile opossum) [GN:gas]
Gene
123248546  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
123247978  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
123249163  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
123234619  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
123242716  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
123238100  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
123253759  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
123249969  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
123233008  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
123252915  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
123236370  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
123237108  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
123237801  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
123249487  DLD; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
123236672  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
123240548  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123246992  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123237888  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
123240343  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
123243854  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
123241899  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
123247792  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
123236881  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
123247524  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
123251955  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
123237147  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
123237978  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
123242405  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
123233959  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
123241893  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gas00010  Glycolysis / Gluconeogenesis
gas00053  Ascorbate and aldarate metabolism
gas00061  Fatty acid biosynthesis
gas00062  Fatty acid elongation
gas00071  Fatty acid degradation
gas00190  Oxidative phosphorylation
gas00220  Arginine biosynthesis
gas00250  Alanine, aspartate and glutamate metabolism
gas00280  Valine, leucine and isoleucine degradation
gas00350  Tyrosine metabolism
gas00470  D-Amino acid metabolism
gas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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