KEGG   PATHWAY: mrb00020
Entry
mrb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Meiothermus ruber DSM 1279
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mrb00020  Citrate cycle (TCA cycle)
mrb00020

Module
mrb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mrb00020]
mrb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mrb00020]
mrb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mrb00020]
Other DBs
GO: 0006099
Organism
Meiothermus ruber DSM 1279 [GN:mrb]
Gene
Mrub_1726  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Mrub_1226  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Mrub_1505  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Mrub_1134  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Mrub_1534  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Mrub_1533  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Mrub_1532  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mrub_2323  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mrub_1129  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mrub_1128  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mrub_1366  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Mrub_1367  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Mrub_2530  Succinate dehydrogenase (ubiquinone) [KO:K00239] [EC:1.3.5.1]
Mrub_2531  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Mrub_1627  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Mrub_0978  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Mrub_2799  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Mrub_0476  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Mrub_1517  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Mrub_1516  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Mrub_0477  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mrb00010  Glycolysis / Gluconeogenesis
mrb00061  Fatty acid biosynthesis
mrb00071  Fatty acid degradation
mrb00190  Oxidative phosphorylation
mrb00220  Arginine biosynthesis
mrb00250  Alanine, aspartate and glutamate metabolism
mrb00280  Valine, leucine and isoleucine degradation
mrb00350  Tyrosine metabolism
mrb00470  D-Amino acid metabolism
mrb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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