Physeter catodon (sperm whale): 102978596
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Entry
102978596 CDS
T06011
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102978596 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102978596 (BARD1)
04121 Ubiquitin system [BR:
pcad04121
]
102978596 (BARD1)
03036 Chromosome and associated proteins [BR:
pcad03036
]
102978596 (BARD1)
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102978596 (BARD1)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102978596 (BARD1)
Ubiquitin system [BR:
pcad04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
102978596 (BARD1)
Chromosome and associated proteins [BR:
pcad03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102978596 (BARD1)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102978596 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4
RTT107_BRCT_5
zf-C3HC4_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
102978596
NCBI-ProteinID:
XP_007115040
Ensembl:
ENSPCTG00005009198
UniProt:
A0A2Y9F6B8
LinkDB
All DBs
Position
2:complement(117092307..117169758)
Genome browser
AA seq
776 aa
AA seq
DB search
MRGNRQPRVRSGNEPHPAPAMEPAGRGAWAHSRAALYRLEKLLRCSRCSNILREPVCLGG
CEHIFCSNCVSDCIGTACPVCYTPAWIQDVKINRQLDSMIQLCSKLRNLLHDTDFSDLKE
ETSRKSLFSDAEYKKNSIKMWFSPRSKKVRYVVSKVSVQTQPPVINSENAQQASMYEFVS
TSPPVDVSERSKKASTKSGKKQKKKTLTEINQKWNLEAEKEDGKLDSKEEFEEKLVSFCS
QPSVIASPQINGKIDLLASGSVTESECFRSLTEVSLPLAEQIESPEIESRNEVVIPEKTL
CENDLTSKKSLPSGHNGKRGRSNRLSSPVSKRCRSSRPSTGGNSIKQTVLSKNMPLPGCS
SPPSKKLKVGDTLRRKSSNILDESISLSPGTPPSTLNSPSYRRMMCSPSAMKLSPSSLMA
MKRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL
QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDSENMKS
LLLLPEKNESSSASHCPVVNTGQRRDGPLVLIGSGLSSEQQKMLSELAAILKAKKCAEFD
STVTHVIVPGDTVQSTLKCMLGILSGCWILKFEWVKACLQRKECEQEEKYEIPEGPHRSR
LNREQLLPKLFDGCYFYLRGTFIHHPKDNLIKLVTAAGGQILSRKPKPDSDVTQTINTVA
YHAKPDSDQHFCTQYIIYEDLSNHRPERVRQGKVWMAPSSWFIDCVMSFELLPLDS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgcgggggaaccggcagccgagggtccgctccgggaacgagcctcatcccgcgcccgcc
atggagccggcaggtcgcggggcctgggcccacagccgcgccgcgctctaccggctggag
aagctgctgcgctgctcgcgttgctctaatattctgagggagcctgtgtgtttaggagga
tgtgagcacatcttctgtagtaattgtgtaagtgactgcattggaaccgcgtgtccagtg
tgttacaccccagcctggatacaagatgtgaagataaatagacaattggacagcatgatc
cagctttgtagtaagcttcgaaatttgctgcatgacactgatttttcagatttgaaagaa
gaaacatctaggaaaagtttatttagtgatgcagaatataagaagaattcaataaaaatg
tggtttagtcctcgaagtaagaaggtcaggtatgttgtgagtaaagtttcagtgcaaact
cagcctcctgtgataaacagtgaaaatgctcagcaggcttccatgtacgaatttgtctct
acaagccctccagtggatgtttctgagaggtctaagaaggcttccacaaaatctggaaaa
aaacagaaaaagaaaactttgactgaaatcaaccaaaaatggaatttagaggcagaaaaa
gaagatggtaaacttgactccaaagaggaatttgaggaaaagctagtatccttctgtagc
cagccatctgttattgctagtccgcagataaatggtaaaatagacttactagcaagtggc
tccgtaacagaatctgaatgttttagaagcttaactgaagtctctttgccattggctgag
caaatagagtctccagaaattgagagcaggaatgaagtagtgattcctgagaagactctc
tgtgaaaacgatcttacatctaagaaatccttgccatcaggtcataatgggaaacgtggg
cgtagcaacagactttccagtcctgtttctaagagatgtagaagcagcaggccgagcacc
ggtggaaattctattaagcaaacagtgctctcaaaaaacatgccattgcctggatgttct
tcaccaccttcaaagaaacttaaagttggtgacacattgaggaggaaaagcagtaatata
ttagatgaatccattagcctttcaccaggtacacccccttctacactgaatagtccaagt
tacagacgaatgatgtgtagtccctcagcaatgaagctatcgcccagtagtcttatggct
atgaaaagaaatcatcgaggagagactttgctccatattgcttcaattaagggcgacatt
ccttctgttgaatacctcttacaaaatggaagtgacccaaatgttaaagaccatgctgga
tggacaccattgcacgaagcctgcaatcacgggcacctgaaggtggtggaattgctgctc
cagcacaaggcgttggtgaacaccactgggtatcagaacgactcacctcttcacgacgca
gccaagaatgggcacgtggatatagtcaagctgttactctcctatggagcctccaggaac
gcggttaacatatttggtctgcggcctgtggattatacagacagtgaaaatatgaaatcg
ctcttgctgctaccagagaagaatgaatcatcatcagctagccattgtccagtagtaaac
actggtcagcgcagggatgggcctcttgtacttataggcagtggactttcttcagaacaa
cagaagatgctcagtgagcttgcagcaattctcaaggctaaaaaatgtgctgagtttgac
agtacagtaactcatgtcattgttcctggtgatacagttcaaagcaccctgaaatgtatg
cttgggattctcagtggttgctggatcctaaaatttgaatgggtgaaagcatgtctacaa
agaaaagaatgtgaacaggaagaaaagtatgaaattcctgaaggaccacatagaagcagg
ctcaacagagaacagctgttgccaaagctgtttgatggatgctatttctatttgagggga
accttcatacaccatccaaaggacaaccttattaaacttgtcactgcagctgggggacag
atcctcagtagaaagcccaagccagacagtgacgtgactcaaaccatcaatacagtcgcg
taccatgccaaacctgattctgatcagcacttctgcacacagtatatcatctatgaggat
ttgtctaatcatcgcccagagagagttaggcaaggcaaagtctggatggctccttccagc
tggtttatagattgtgtgatgtcctttgagttgctccctcttgatagctga
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integrated database retrieval system
