Paraburkholderia dioscoreae: PDMSB3_1278.1
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Entry
PDMSB3_1278.1 CDS
T08115
Symbol
ddpX
Name
(GenBank) D-alanyl-D-alanine dipeptidase
KO
K08641
zinc D-Ala-D-Ala dipeptidase [EC:
3.4.13.22
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio01502
Vancomycin resistance
pdio02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PDMSB3_1278.1 (ddpX)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
PDMSB3_1278.1 (ddpX)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pdio01002
]
PDMSB3_1278.1 (ddpX)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pdio01011
]
PDMSB3_1278.1 (ddpX)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
pdio01504
]
PDMSB3_1278.1 (ddpX)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.13 Dipeptidases
3.4.13.22 D-Ala-D-Ala dipeptidase
PDMSB3_1278.1 (ddpX)
Peptidases and inhibitors [BR:
pdio01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
PDMSB3_1278.1 (ddpX)
Peptidoglycan biosynthesis and degradation proteins [BR:
pdio01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
PDMSB3_1278.1 (ddpX)
Antimicrobial resistance genes [BR:
pdio01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
PDMSB3_1278.1 (ddpX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M15
VanY
Usp
Motif
Other DBs
NCBI-ProteinID:
VVD32569
UniProt:
A0A5Q4ZC12
LinkDB
All DBs
Position
II:complement(1314985..1315548)
Genome browser
AA seq
187 aa
AA seq
DB search
MTDHRLIEITHATHGVDIDLVYATARNLTGKPIYRAAHCLLLEPAEAALRRAVELARQIG
TTLRIFDAYRPPQAQQVLWDFLPDPTYVADLKRGSNHSRGTALDLTLLDAQGEELDMGTG
FDAMTIESEHFHPGLQADVQRNRMLLLGVMHGAGFTHIKSEWWHYELPGSRALPLIDNNA
SGPLRLM
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccatcgactcatcgaaatcacacacgccacgcacggcgtggacatcgacctc
gtctacgccacggcgcgcaatctcaccggcaaaccaatctaccgggccgcgcattgcctc
ctgctcgaaccggcggaggcggcgttgcgccgcgcagtggaactggcacgtcagatcggc
acgacgctgcgcattttcgacgcgtaccggccgccgcaagcgcagcaggtgttgtgggat
tttctgcccgacccgacttacgtggcggatctgaaacgcggctcgaatcatagccgtgga
acagcgctcgacctgacactgctcgacgcgcaaggcgaggaactcgacatgggcaccggc
ttcgacgccatgacgatcgaatcggagcactttcaccccggtctgcaagcagatgtgcag
cgcaatcgcatgctgttgctcggcgtgatgcatggcgcgggcttcacgcacatcaaaagc
gaatggtggcactacgagttgcccggttcgcgcgcattgccgcttatcgacaacaatgca
agcgggccgctccggctgatgtga
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integrated database retrieval system
