Prunus dulcis (almond): 117624995
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Entry
117624995 CDS
T07328
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117624995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117624995
04121 Ubiquitin system [BR:
pdul04121
]
117624995
03036 Chromosome and associated proteins [BR:
pdul03036
]
117624995
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117624995
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117624995
Ubiquitin system [BR:
pdul04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
117624995
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117624995
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117624995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_6
zf-RING_5
RTT107_BRCT_5
zf-RING_10
zf-rbx1
PTCB-BRCT
zf-Nse
Motif
Other DBs
NCBI-GeneID:
117624995
NCBI-ProteinID:
XP_034212438
LinkDB
All DBs
Position
4:4560077..4565397
Genome browser
AA seq
1025 aa
AA seq
DB search
METPAHLEKMGRELKCPICLSLLNSAVSLNCNHVFCNSCIVKSMKSGSNCPVCKIPYRRR
EIRPAPHMDNLVSIYKSMEVASGINIFVTQNAPSTKSSDGKLQAQDDGHDEQDIPKHCQD
RDEKQKSLRGKGSRKTKSNLKNSGSLSVKPSFPTKKRVQVPQCPLSETPTRPEKTVGKLM
DERSKHSSTTLNRRPVLNEVGEPMLSPFFWLRDKDEENLSQHTDGDQLTDSPPNVPTFSD
IKDSEDEYSARLTPPDEVHGKSSNVADLFDSEMFEWTQRECSPELFQSPSKMQVPDSDDI
DRVQEKELKEISQNKKLDEAHSAKNARSRNSRQSSGNMYFLPDIPPAGAKDNSQVVSNEL
NKQGRQTRNISKRKCTTSHTDPGADVSVNVNSKGSNVFYEEPVCKNNSSSLAKISKRSKK
EHPSVVAMKPTSENVHVLSTEAETQNNGDDKGITESPTSLGKSEGGNAPPSKKAGKICNE
VNAKSQMHCPVRSRKQKMVSMPNKMLDEVSEVQKQANKDTTTESSLINLSTVDNKKASEF
GNKSRKLQRGAKLCDRELKNKKATVSSDSNSKDDTFVRVGEGHGNVNENGNQPTEKIEGN
CDVPTDRSPVQKLSSLTNNLVLQRCEAIPSKIQCAFCLSSEESEASGEIVHYYNGKPVAV
DHNGGLKVIHAHRICTEWAPNVYFEDETAVNLEAELTRSRRIKCSCCEIKGAALGCYERS
CRKSFHVTCAKLMPQCRWDTDNFVMLCPLHASSKLPNESSESQARRRKSNPRKQSNAEHY
KAAVKQDNTMPPDRKFCGSSKKLVLCCSSLTNAERESVSGFERLSGLTVLKNWDSSVTHV
IASVDENGACRRTLKVLMGILEGRWILSMEWINACIEAMKLVNEEPYEINVDIYGIRDGP
RLGRLRLQNKQPKLFDGFKFYFMGDFVPSYKGYLQDLVIAAGGTILHRKPVPEGQKAFSA
SSPKCQTFIIYSLEQPEQGHPSKGTILDRRQSDAKALASSAGAMAASNSWILNSIAACKL
QSFSE
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggagactccggcccacctcgagaaaatgggcagagagctcaagtgccctatttgtttg
agtctgctgaattctgcggtttcacttaattgcaatcatgtcttctgcaactcttgtatt
gtgaaatcaatgaaatcgggttccaattgtcccgtttgtaaaattccatatcggcgcaga
gagattcgtcctgctccacacatggataatttggttagtatttacaaaagcatggaggtt
gcttcaggaattaatatatttgtcactcagaatgcaccctcaactaaatcatcagacgga
aaactgcaagcccaagatgatggtcatgatgagcaagatatccctaaacattgtcaggat
agagatgagaaacagaaatccttaagaggaaaaggatcaaggaaaactaaatccaacctg
aaaaattcgggttctctttcagttaaaccttcatttccaaccaagaaaagggttcaggtt
ccacagtgtcctctttcagaaactcctacacgccctgaaaagacagttggtaaactaatg
gatgaaaggtctaagcacagttcaacaactttaaataggaggccagttctaaatgaagtg
ggagaaccgatgctttcacctttcttttggttgagagacaaggatgaagaaaatttgagt
cagcatactgatggtgatcaactcactgatagtcctccaaatgttcctactttcagtgat
atcaaagactcagaagatgaatactctgctagattgaccccaccggacgaagtgcatgga
aaatcttcaaatgttgcagatttatttgatagtgagatgtttgaatggacacaaagagaa
tgctcccctgagctcttccaaagtccttctaagatgcaggttcccgacagcgatgatatt
gatagagttcaagagaaggaactgaaagaaatctcacaaaacaagaaattagatgaagca
cattctgctaaaaatgcaaggtctagaaattctagacaaagtagtggaaatatgtatttt
ctgccagatattccccctgctggagcaaaagacaatagtcaagttgttagtaatgaattg
aacaagcaaggtaggcagacaaggaatataagtaaaagaaagtgcactacaagtcatacg
gatccaggtgctgatgttagtgttaatgttaattcaaaaggatctaatgtattttatgaa
gaaccagtatgtaagaataattctagttctttggccaagatttccaaaaggagtaagaag
gaacatccatctgtggttgcaatgaagccaacatctgaaaatgttcatgtcctctcaaca
gaagctgaaactcaaaataatggtgatgacaaggggataactgaatcaccaacttcatta
ggaaagagtgaaggtggtaatgcaccacccagtaagaaggctggaaaaatctgtaacgag
gtaaatgccaagagccagatgcactgcccagtaaggtcaagaaagcaaaagatggtctct
atgccaaacaaaatgcttgacgaggtatcagaagtacagaagcaggcaaataaggatact
acaactgagtcgtctcttataaatctctctacagttgataacaagaaagcctctgagttt
gggaacaaatccagaaaacttcagaggggagccaagttatgtgatcgagaattgaagaat
aaaaaggcgacagtttcctctgatagcaactcaaaggatgatacttttgttagggttgga
gagggtcatgggaatgttaatgaaaatggaaatcaacccactgaaaagatcgaaggcaat
tgtgatgtcccaactgatcgatcaccagtgcagaagctttcttcactgacaaacaatttg
gtcttgcagagatgtgaggccattcctagtaaaatccaatgtgctttctgtctttcatca
gaagaatcagaggcgtctggagagatagtccactattataatggcaagcctgttgctgtg
gatcacaatggaggactcaaggttattcatgcacacaggatctgcactgaatgggctccc
aatgtctattttgaagatgaaactgctgttaatcttgaagctgagttaactaggagtcgt
agaattaaatgttcttgctgtgaaattaaaggtgcagctcttgggtgttatgagaggagt
tgtcgtaagagctttcatgtcacctgtgcaaagttgatgcctcagtgtcgatgggatact
gataattttgttatgttatgcccccttcacgcctcttctaaattgccaaatgaaagctct
gaatctcaagcaaggaggaggaagagcaatcctagaaaacagtctaatgctgaacattat
aaagctgctgttaaacaagacaacaccatgcctccagatcggaaattttgtggatcatcc
aagaaattagttctctgttgttcatctctcaccaatgcagagagggaatctgtttctgga
tttgaaagattatctggacttacagttttaaagaattgggattctagtgtcacccatgtt
atcgcgtcagtagatgaaaatggagcatgcagaaggaccctcaaagttttgatgggtatc
ttggaggggaggtggatcctgagtatggaatggattaatgcttgcatagaagccatgaaa
ctagttaatgaggagccttatgaaattaacgtcgacatttatggaatcagggatggtcct
cgactcggtagactaagacttcagaacaagcaaccaaagctttttgatgggttcaagttt
tactttatgggagactttgtaccgtcatataagggttatctacaagacctagtaatagct
gctggaggaactattctgcatagaaagcctgttccagagggccagaaagccttttcagcc
agttccccaaaatgtcaaaccttcataatttacagccttgagcaacccgagcagggtcat
cctagcaagggtacgatattggaccgcaggcagtctgatgcaaaggctttggccagttct
gctggagccatggcagcaagcaattcatggattttgaactccattgctgcctgcaagtta
caaagtttttctgaatag
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