Prunus dulcis (almond): 117637177
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Entry
117637177 CDS
T07328
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117637177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117637177
04121 Ubiquitin system [BR:
pdul04121
]
117637177
03036 Chromosome and associated proteins [BR:
pdul03036
]
117637177
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117637177
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117637177
Ubiquitin system [BR:
pdul04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
117637177
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117637177
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117637177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_6
zf-C3HC4_2
zf-C3HC4
zf-RING_2
Prok-RING_4
zf-RING_5
zf-RING_UBOX
PTCB-BRCT
zf-C3HC4_4
zf-RING_10
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
117637177
NCBI-ProteinID:
XP_034227893
LinkDB
All DBs
Position
8:complement(17735857..17740546)
Genome browser
AA seq
681 aa
AA seq
DB search
MADSKCSDSSTRSMMNPWVLHFQKLGLELKCSFCLSLLHRPTLLPCNHIFCNSCIPNSTH
FGKECPLCKVQVADRDLRPAPFMENIVAIYKSLDASFCANLLQPISSGTTYVRTVSPNIS
FAGKMAKESFDNGQGGNSNSGQSIYSSGANERVWVPCSLNRSVADVVDTNCKVDKCVMPI
DGFNGVGNPNSPPNSQIKAGGLEECMTIERDMNQVAQSLPDSPPSFGDTKCSDNDSSDRH
HEQISESSLVRKSISEIDDSRTGLKRHDSSATENDGHLRHLKKQKNLNFEPVSTTNSELE
HGFRTSSNTICAFCQSSTISEVTGPILHYANEKLVVGDEAAVSNAIPVHRICIDWAPQVY
FVGESVKKLKAEVARGAKLKCSKCGLKGAALGCFVKSCRRSYHVTCAIGISKCRWDRENF
LLLCPAHCSVKFPSEKSNSENPKICPLSNSWVASNGAKEWILCPSGLSSEEKLLLIKFAK
MNGGTVSKIWRPEVTHVIAAVDEDGAYVRTLKTCMAILAGRWILKIDWVKACMEAMHHVD
EEPYEVSLDNYGCHDGPKTGRLRALNKDPKLFNGLSFYFAGDFVLDRQEDLEDLIIVAGG
TVFDSTEEALEQSSLGQAASRTLVVYNLDPQEGCKLGEEVSILWQRSNDAQDIAAKIGSQ
IVGHTWLLESIARCELQPLVC
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctaagtgtagtgacagttctaccaggtcgatgatgaatccgtgggttctt
cattttcagaaactgggtcttgagctcaagtgttcgttctgcttgagtttgcttcatcgg
ccaacattgcttccatgcaatcacattttctgcaattcctgcatacccaattcgacgcat
tttggaaaagagtgccctttgtgtaaagttcaagttgcggatcgagatctcaggcctgcg
cctttcatggaaaacatagtagcaatctacaaaagcttggatgcgtctttctgtgccaac
ttgttgcagcccatttcttctggtacaacctatgttaggacagtttcgcctaatatcagt
tttgctgggaaaatggctaaagaatcatttgacaatggccaagggggtaattcaaacagt
gggcaatccatctattcatcaggtgctaatgaacgagtttgggttccatgtagtctgaat
cgttctgttgcagatgtagttgacacgaattgcaaagtagataagtgtgtcatgccaata
gatggatttaatggagtgggaaatcccaattcgcctccaaactctcaaataaaagctggg
ggacttgaagaatgtatgaccatagaaagagacatgaatcaggtagcgcagtcattgcca
gacagtcctccttcatttggtgataccaaatgttcagataatgatagctctgatcgtcac
catgagcaaatttcagaaagttctttggtcaggaaatctatcagtgaaattgatgatagt
agaacaggtctgaagaggcatgatagttctgcaactgaaaatgatggtcatttgaggcac
ctcaaaaaacaaaagaatctgaactttgagccagtttcaactactaattctgagctggaa
catggattcaggacatcttctaataccatttgtgcattttgccagtcttccacaatctca
gaggttacagggccaatcctgcattatgctaatgagaaattggtagtgggagatgaggca
gctgtttcaaatgccatacctgttcacagaatatgcattgattgggcaccacaagtgtat
tttgttggtgaatctgttaagaagttgaaagcagaagtggcaaggggtgcaaagcttaaa
tgcagcaaatgtgggctaaagggagcagcattgggatgctttgtgaagtcatgccggaga
agctatcatgttacctgtgcgattggaatttctaaatgtcgttgggacagggaaaacttt
ctgctgctctgtccagctcattgttctgttaaatttcccagtgagaagtcaaattctgag
aatcccaaaatatgtccactgtccaacagttgggtagcttcaaatggagcaaaagaatgg
attttatgcccttctggtttgtcttctgaagagaagcttcttttgatcaagtttgccaag
atgaatggtggaactgtgtccaagatctggagaccagaggttacacatgtaattgcagcc
gtggatgaggatggtgcatatgtccggactttaaaaacctgcatggccattttggctgga
agatggattctgaaaattgactgggtaaaagcatgcatggaagccatgcatcatgtagat
gaagaaccttatgaagttagtcttgataactatgggtgtcatgatggcccaaaaactggc
aggcttcgggcattaaacaaggatccaaagctcttcaatggtttgagtttctattttgct
ggtgattttgtactggatagacaggaagatcttgaagatttgatcatagtcgcaggaggt
actgtttttgacagcacagaagaagcgctggaacaaagttctcttggacaggcagcttca
aggacgctagttgtttacaaccttgacccccaagaaggatgcaagttgggggaagaagtt
tcaatcctttggcaaaggtcaaatgatgcccaggatatagccgcaaaaattggatcccaa
atcgttggccacacctggctcttggaatcaattgctagatgtgagttacagcctcttgtc
tgttga
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