Panicum hallii (Hall's panicgrass): 112880742
Help
Entry
112880742 CDS
T07366
Name
(RefSeq) histone deacetylase 15-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phai01009
]
112880742
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112880742
04131 Membrane trafficking [BR:
phai04131
]
112880742
03036 Chromosome and associated proteins [BR:
phai03036
]
112880742
Enzymes [BR:
phai01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112880742
Protein phosphatases and associated proteins [BR:
phai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112880742
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
112880742
Membrane trafficking [BR:
phai04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112880742
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
112880742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
112880742
NCBI-ProteinID:
XP_025801278
LinkDB
All DBs
Position
2:complement(2426062..2442739)
Genome browser
AA seq
616 aa
AA seq
DB search
MRGRFETCTGYFLMASDMQPLSGHEIPSCAVENCGVFDHACHGKCQSCDSDVKPSCGEVN
GISSLIGSHTDGKASKENCGACTFTYDCADLDGCLIATNGSCMAVDELTQEFEREQAGAT
LEDLVFSNDEEDDDSDWDPASSLVTNRWFCLNCTMPNVDVVMYCLNCHELKGSGVDGYDA
FKTQIAEAALVSPDTELPAVSTAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLSAA
GIFPSKCALVPPREITKEELLMVHTPDHIESVEQTKNMLYSYFTSDTYANGHSACAAKLA
AGLCADLASLIVSGRVQNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKKVL
IVDWDVHHGNGTQEIFEGDKSVLYVSLHRHEYGNFYPGTGAAHEVGILDGQGFSVNIPWS
RGGVGDNDYIFAFKTVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPIGYSIMTSLL
TACSGGRLLVILEGGYNLRSISSSATEVVKVLVGDGSSFDVATAPSKEGLETVLQVLKIQ
QQFWPILGPAYASLQAQQGSVFSKSTNKKRKHSGVPGPFWWKFGSKRLLYKALYEGPLLR
KIKGFRQGKVIDSAEP
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcagatttgagacttgtactggatacttccttatggcatctgatatgcaacca
cttagtggccatgagataccctcctgtgctgtggagaactgtggagtttttgatcatgca
tgtcatggcaaatgccaaagctgtgatagtgatgtaaaaccatcttgtggtgaagtgaat
ggaatttcctcgttgattggtagtcatactgatgggaaggcttcaaaagagaactgtgga
gcatgcacttttacttatgattgtgctgatcttgatggctgtttgattgccacaaatgga
agttgcatggctgttgatgagctaacgcaagagtttgagagagaacaagctggggctaca
ctggaggatctggttttctctaacgatgaagaggacgatgacagtgattgggaccctgct
agtagccttgttacgaataggtggttttgcttgaattgcacaatgccaaatgtggacgtg
gttatgtattgcctgaattgccatgagcttaagggatcaggtgtagatggatatgatgct
ttcaagactcaaattgcagaggcagctttggtatctcctgacacagaattgccggcggtg
tctacagcgattggttttgatgaaagaatgctgctccacagtgagctagaagttaaacca
aatccacatccagaaagaccggaccgccttcgtgcaattgctgccagtctttctgctgca
ggaatctttccctcaaaatgtgctttggtaccccctcgggaaattaccaaggaggaactc
ctaatggttcatactccagaccacattgaaagtgttgagcagacaaagaacatgctttac
agttacttcacttcagatacttatgcaaatggacactcagcatgtgccgccaaacttgca
gcaggactctgtgctgatcttgctagtttgatagtatctgggcgtgttcaaaatggcttt
gcaatggtgagacctcctggacatcatgcaggggtgaagcaagcaatgggtttttgtctt
cacaacaatgcagcagtggctgcgttagctgcaaaaagagcaggtgccaagaaagtcctc
atagttgactgggatgtgcaccatggaaatggcacacaagagatattcgaaggggacaaa
tctgtcttgtacgtatcattacatcgtcatgagtatggaaacttctaccctggaactgga
gcagcacatgaggttggaattcttgatggtcaaggcttttcagttaatataccttggagc
cgtggcggtgttggagacaatgactacatctttgcttttaagactgtggtgcttccaata
gctgcagaatttgccccagacatcacaataatatctgcaggattcgatgcagctagaggt
gaccctctgggttgttgtgatgtcactccgataggatactctataatgacatccttgtta
actgcgtgctcagggggaagattgttggtgatactcgagggaggatacaatcttcggtcg
atatcctcatcagctactgaagttgttaaggtcttagttggggacggttcaagttttgat
gttgcaactgcaccatcaaaagagggcttggagactgttttacaagtcctgaagattcag
caacaattttggccaattttaggtccagcctatgcatcactgcaggcacaacaggggtcg
gttttttccaaatctactaacaagaaaaggaagcattcaggagttccagggcccttctgg
tggaagtttggaagcaaaaggttactgtacaaagcactctatgaggggccccttctgagg
aagatcaagggctttagacaaggaaaagtgattgattcggcagagccttag
DBGET
integrated database retrieval system
