Perognathus longimembris pacificus (Pacific pocket mouse): 125349911
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Entry
125349911 CDS
T08928
Symbol
Bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125349911 (Bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125349911 (Bard1)
04121 Ubiquitin system [BR:
plop04121
]
125349911 (Bard1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125349911 (Bard1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125349911 (Bard1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125349911 (Bard1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
125349911 (Bard1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125349911 (Bard1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125349911 (Bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_4
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
NIBRIN_BRCT_II
Motif
Other DBs
NCBI-GeneID:
125349911
NCBI-ProteinID:
XP_048200132
LinkDB
All DBs
Position
4:18613507..18682023
Genome browser
AA seq
772 aa
AA seq
DB search
MPRSRQPRVRSGNEPYPAPAMESEVGGGAWAHSRAAFARLEKLLLCSRCTNVLKDPVCLG
GCEHIFCSDCVSDCIGTGCPVCHTPAWVLDVKINRQLDSMIHLCSKLRNLLHDNELSDVK
EGTSRTRIFSDAENKKNSIKMWFSPRSKKARYVVTKDSVPTKPQKTTDEKALPASVYEFI
SATPPTVVSKRTKKASTTSAKKQTHRTLAEINQEWNKGLEQEGIDLVSKDEFKERIVSFC
SQPSVLFSPEENGGIDLLESCSVEESECGNVTEMSLPVAEHIVSPDIENKKEVTPEKVHK
NDRTSKTSLRVGCNGKHRSSNKPSQPFPKRSRNRVSSTLRGSVKPTVYSENIQLLDCSPS
SSNLPVDETLRRNSNVSDDSISLSPPTLPSSLNSSTYRRMISSPSTTKPSPSSLVVGKRN
HRGETLLHIASIKGDVPSVEYLLRNGNDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA
LVNSTGYHNDSPLHDAARNGHLDIVKLLLSHGASRNVVNIFGLRPVDCTDNENMKSVLLL
PEENESSSTCYRSVMSSWSRRDGPLVLIGSGLSSEQQKMLSELAVILKAKKCAEFDSTVT
HVVVPGDEAQSTLKCMLGILNGCWLLKFKWVKACLQTKVFEEEEMYEIPEGPRRSRINKE
LLLPKLFDGCYFYFWGSFIHHPKDNLTKLVTAGGGQILSRKPKPDSDVTQTINTVSYHAK
PDSDQRFCTQYIIYEDLSDYCPERVRQGKVWMAPSSWLISCVMSFELLPLDS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggagccggcagcccagggtccgttctgggaacgaaccttatcccgcgcccgcc
atggagtcggaggttggcggcggggcctgggcccacagccgcgccgcattcgcccgcctg
gagaagctgctgctctgctcgcggtgtactaatgttctgaaggaccctgtgtgcctagga
ggctgtgagcacatcttttgtagtgactgtgtaagtgactgcattggaacaggatgtccc
gtgtgtcacactccagcctgggtactagatgtcaagataaacagacagttggacagcatg
atccacctttgtagtaagctccgaaatctgctccatgacaatgagctttcagatgtgaaa
gaaggtacatctaggacaagaatatttagtgatgcggaaaacaagaaaaattcaataaaa
atgtggtttagccctcgaagtaagaaggctagatatgttgtgactaaagactcagtacca
actaagcctcaaaagacaacagatgagaaagctctgccagcttcagtgtatgaattcatt
tctgcaactcctcccacagttgtttctaagagaactaaaaaggcatctacaacttctgca
aaaaagcaaacacatagaactttagctgaaatcaaccaagaatggaacaaagggctagaa
caagaaggtattgaccttgtgtccaaagatgaattcaaggaaaggatagtgtccttttgt
agccagccatctgttttatttagtccagaggaaaatggtggaatagacttacttgaaagt
tgttccgtagaagaatctgaatgtggaaatgtgactgaaatgtctttgccagtggctgaa
catatagtgtctccagacattgagaataagaaggaagtgactcctgagaaggtccataaa
aatgaccgtacttctaagacatctttgagagtaggttgtaatgggaaacatagatctagt
aacaaaccttctcagccttttcctaaaaggagtagaaacagggtttctagcactcttaga
ggttctgttaaaccaacagtgtactcagaaaacatacaattgcttgattgttcaccatct
tcaagcaatcttccagtggatgaaacactcaggagaaacagtaacgtgtcagatgattcc
attagcctctcaccaccaacactgccttcttcactgaatagttcaacatacagacgaatg
atatccagcccctcaacaacaaagccctcacccagtagccttgtggttgggaaaagaaat
catagaggagagactttgcttcatattgcttctataaagggtgatgtaccttctgttgaa
tacctcttgcgaaatggaaatgacccaaacgtaaaagaccatgctggatggacaccactg
cacgaagcctgcaatcatgggcatctgaaggtcgtggaattgctgctacagcataaggcc
ttggtgaacagcaccggctaccacaacgactccccacttcatgatgcagcccggaatggt
cacctggacatagtcaagctcttattgtcccatggagcttctaggaatgttgttaacata
tttggtctgcggcctgtggattgtacagacaatgaaaatatgaaatcagtattgctgcta
ccagaggagaatgaatcatcttcaacttgttatcgctcagtaatgagtagctggtcacgt
agggatggacctctcgtgcttattggcagtgggctttcttcagaacaacagaaaatgctc
agtgagcttgcagtaattttgaaggctaaaaaatgtgctgaatttgacagtacagtaaca
catgtcgttgttcctggtgatgaggctcaaagtactctgaaatgtatgcttgggattctc
aatggatgctggcttctcaagtttaagtgggtaaaagcatgtttacaaacaaaagtattt
gaagaggaagaaatgtatgaaattcctgaaggtccacggaggagcagaatcaacaaagaa
ctgctgttaccaaagctgtttgatggatgttacttctatttttggggatccttcatacat
catccaaaagacaaccttactaagcttgtcactgctggagggggccagatcctcagtaga
aaacccaaaccagacagtgatgtgactcagaccatcaatacagtctcataccatgccaaa
cccgattctgaccagcgcttctgtacacagtacatcatctatgaagatttgtctgattac
tgcccagaaagggttcggcagggcaaagtctggatggctccttcgagttggcttataagc
tgcgtgatgtcctttgagttgcttcctcttgacagctag
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