Petromyzon marinus (sea lamprey): 116949292
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Entry
116949292 CDS
T09614
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmrn01009
]
116949292 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116949292 (HDAC6)
04131 Membrane trafficking [BR:
pmrn04131
]
116949292 (HDAC6)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116949292 (HDAC6)
Enzymes [BR:
pmrn01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116949292 (HDAC6)
Protein phosphatases and associated proteins [BR:
pmrn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116949292 (HDAC6)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116949292 (HDAC6)
Membrane trafficking [BR:
pmrn04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116949292 (HDAC6)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
116949292 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
116949292
NCBI-ProteinID:
XP_032822319
EnsemblRapid:
ENSPMAG00000006118
LinkDB
All DBs
Position
36:1967537..2017638
Genome browser
AA seq
1331 aa
AA seq
DB search
MSAAGAGKMDHCPGRGREKPSSAGGKRRNRQKMSQESRKSDRIAQVKQDRMGRRMAQLDV
PQHVECAYGTGLVFDARMELVSCPWESHVECPERAKEVLASITRSGLVPRCSVVEPRMAS
VEELMFCHSQEYIRMMQSTAEMSDQERKSLSDTFDSVYLHKGSYDGALLAVGSVLQLVER
VLTGDLRNGFALVRPPGHHAQRDLANGYCIFNNVAIAAQYALSQHQLQRVLIVDWDVHHG
QGIQYTFQDDPRVLYFSVHRHEGGAFWPHLSEGDVTAVGRGIAKGFNINLPWSRTGMSDA
DYVTAFQQILMPVAYQFSPQLVLVSAGYDAALGDPKGEMCVSPPCFGLLTHMLMSLANGR
LCLALEGGYNLEVTAAGVCATLHALLGDPVTSTGGSRQAKCSALEDIGRTLAIQQKYWSC
LRCHGLAKSTSVSENDDKEGKEIETDREKDPASTTEIGVMTTDEKTEVMKSGVTETPVAA
EAVVTEIGDGVVMGMVTMETRITGLVYDKRMRDHHNMWDRFHPEQPDRISVMFSRHEDLG
LVGRCHMVTARLATEEELLTCHSVRHVNAMRETTSMKARDLHRCSADYNSVYLSPSSFDS
ACLAAGAALSLVEAAMCGQVSNGVAIIRPPGHHAESDVACGFCLFNTVALAAKHAQSLAR
RQIRVLIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDGGRFFPCSEDANVDRVGTGPGKG
FNVNVPWPGPYMRNAEYLAAFTSTVLPIAYEFDPELVLVSAGFDAAQGDPLGLCMVTPDC
YAHMTHMLLGLANGRVLLFLEGGYNLTTIAECMAMCTRTLLGDPTLALGPLEPPQAGAER
VLTSVLHTHSPLWHNLRIPVPLTEESPEDGQRGDDLSTLTPAAVHAHQEHLDKQHPAADD
SARSSASHSFTASLLGDTGSLGSSNSASDFTDSSYFTADSPVGSTSMPRSASSPQDTTAS
PGGCALIRSFSGSPPRAMDSPDVSTPLSPPTSAGAASASTSTPAGSRVSGANTPQDPLTP
IAADSPVLPPLRPRVPPDQSSAAPAGTAASVDELAEAMASWAPGLGSKAEQTGSSDGRPP
HVCTAKNGLVPSDGVGLSAGMGSRLDGAAVGGARPKMRLSDCVRQGQEGDSPMDASSPHG
GIHEDGSKSDRTGVCESEAVRGGEAVCGESEAVCGESEAACGGETGGPCAIPGKDEVASG
IHEDDVGLAEASGWTPPSLCYAVKPLSWCPHLDAVTAIPGGAVDPSSPCVDCGDSSENWL
CLVCYEAYCGRYVRGHMLQHSEKSGHALVLSFADLSAWCYSCDSYVHHELLFPAKRAAYR
SKFDEEMPGLP
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggcaggagctggcaaaatggatcattgtcctggcagaggtcgtgagaagcca
tcgtcggcgggtggcaagcggaggaacaggcaaaagatgtcacaggagagccggaagagt
gatcgtatagctcaagtcaagcaggacaggatggggaggcgtatggcccagctggatgtg
ccacagcacgtggagtgtgcgtatgggacaggcctggtgttcgacgcgcgcatggagcta
gtctcctgcccctgggagagccacgttgagtgccccgagcgagcgaaagaagtgctggca
tccatcacgcgctctgggctggtgccccgctgctctgttgtggagcccagaatggcctca
gtggaggagctgatgttttgtcacagccaggagtacatacgcatgatgcaatccacagct
gaaatgtcggatcaggagcggaagtccctgtcagacacattcgactcggtgtatctccac
aagggctcgtatgacggcgcactgctagcggtgggcagtgtgctgcagttggtggaacgt
gtgttgacgggggacctcaggaatgggtttgcacttgtgcgacctccaggacaccatgcc
cagagggacctggcaaacggttactgcattttcaacaatgtcgccattgcagcccaatac
gcgctgtcacagcaccagctgcagagggtgctgattgtggattgggatgttcaccacgga
cagggaattcagtacaccttccaagatgatcccagggtgctctacttctccgtgcaccgt
catgaagggggggctttctggccccacttgtcggagggcgacgtcacggctgtgggacgc
ggcatcgcgaagggcttcaacatcaacctgccctggtctcggacaggaatgtccgacgcg
gattacgtgaccgcctttcagcagatcctcatgcccgtggcttatcagttcagtccgcag
ctggttctcgtatctgctggctatgatgcggctctcggagaccccaagggtgagatgtgc
gtgtcacctccgtgcttcggtctcctcacacacatgctcatgtcgctggctaatgggcgg
ctctgcctggctcttgagggcggctataacctggaagtgactgcggcgggggtgtgtgcc
actctgcacgccctcctgggagatcctgtcacctccacggggggttcacgccaggccaag
tgcagtgctctggaggacattgggcgaacgctcgccattcagcagaagtactggtcgtgc
ctgcgctgccatggtttggcaaagtcaacatcagtctctgaaaatgatgacaaagaaggc
aaagagattgagacggacagggaaaaggaccccgcaagcaccacagaaatcggcgttatg
acgacagatgaaaagaccgaagtcatgaaatccggcgttacggagacccccgtcgcggcg
gaggctgttgtcacggaaataggagatggggttgtcatggggatggtcaccatggagacg
cgcatcaccgggttggtgtatgacaagcgcatgagggatcatcacaacatgtgggaccga
ttccaccctgagcagcccgaccgaatctccgtaatgttctcccggcacgaggatctggga
ttggtggggaggtgtcacatggtaacagcccggctggccacagaggaagagctccttact
tgccacagcgttcggcacgtgaacgcgatgcgggagacgacgagcatgaaggcgcgggat
ctgcaccggtgcagcgcggattacaactctgtctacctgagccccagctcgttcgacagt
gcctgcttggcggccggggcagcgctcagcctagtggaggccgccatgtgtggccaggtg
agtaacggggtggcgatcattcgtccccccggtcaccatgccgagagcgacgtcgcctgt
ggcttctgtctcttcaacacggtcgccctggcagccaaacacgcgcagagcctggcgcgc
cgccaaatacgggtgctcatcgtggactgggatgtgcaccacggcaatgggacccagcac
atattcgaggatgaccccagcgtgctctacgtgtcactgcaccgatacgacggagggcgt
ttctttccgtgctcggaggatgcaaatgtcgaccgtgtgggcacggggcccggcaaaggc
ttcaacgtgaatgtgccgtggccggggccctacatgagaaacgccgagtacctggccgcg
ttcacgagcaccgtgttgcccatcgcttacgagttcgaccccgagctggtgcttgtgtcg
gcgggatttgacgcggcacagggcgaccccctgggcctctgcatggtgaccccggattgc
tacgcgcacatgacgcacatgctgctagggttggctaacggacgggtccttctcttcctg
gagggagggtacaacctcaccacgattgccgagtgcatggccatgtgcacccgcacgctg
ctgggagaccccacgttggccctcgggcccctggagccgccccaagcgggcgccgagagg
gtgctcaccagcgtcctgcacacgcacagcccgctctggcacaatctgcgcataccagtg
ccactcactgaggagtcccccgaggatggccagcgtggggacgacctctcgaccctgaca
cccgcggccgtgcacgcgcaccaggagcacctcgacaagcagcaccccgccgccgacgac
agcgcacggagctccgcgtcccacagcttcacggccagcttgctcggcgacacggggagc
ctcgggagttcaaactcggcgagcgatttcacggacagctcgtatttcacggcggacagc
cccgtgggttctacgtcgatgccgcgttccgcgagcagcccgcaggacaccacggccagc
cccgggggttgcgcgttgatccggagcttcagcggtagcccgcctcgtgccatggacagc
cctgacgtttctacgccactttccccaccgacatccgcgggcgctgcgagcgcgtctacg
tcgacccccgcgggcagcagggtgagcggagcgaacaccccgcaagatcctctgacaccg
attgctgcggatagcccagtgctgccccctctgcgaccgcgggtaccgcccgaccagtct
tcggcagcaccggctgggacagcggcatccgtggatgaactggcggaggcaatggcctct
tgggcgcccggtctgggctcgaaggctgagcagacaggaagtagtgacgggcggcctccg
cacgtgtgcaccgccaagaatggccttgttccgtcggacggcgtggggctgtctgctggg
atggggtctcgcttggatggcgcagcggtgggtggggccagacccaagatgcgactctct
gattgcgtgcggcagggtcaggaaggagactcgcccatggacgcgtcgtcaccgcacgga
ggcatccacgaggatggcagcaagagtgatcgtacaggagtgtgcgagagcgaggctgtg
cgtggtggcgaggctgtgtgcggtgagagtgaggccgtgtgtggtgagagtgaggctgcg
tgtggcggtgagactggaggaccgtgtgctatacccgggaaggatgaagtggcctccgga
atacatgaagatgacgtgggtttggcggaggccagcggctggacgcccccgtcgctgtgc
tacgcggtgaagccgctgtcctggtgtcctcacctggacgccgtgacggccatccccggc
ggggccgtggatccctcctccccgtgcgtcgattgcggggactcgtcggagaactggctg
tgcctcgtctgctatgaggcatattgcgggaggtacgtccgcgggcacatgctgcagcac
agcgagaagagcggacacgcgctcgtgctaagcttcgcggacttgtctgcctggtgctac
tcctgcgactcgtacgtgcaccacgagctgctgttcccagccaagcgggccgcctatcga
tccaagtttgacgaggagatgccgggcctgccctga
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integrated database retrieval system
