Populus trichocarpa (black cottonwood): 7470812
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Entry
7470812 CDS
T01077
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
7470812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7470812
04121 Ubiquitin system [BR:
pop04121
]
7470812
03036 Chromosome and associated proteins [BR:
pop03036
]
7470812
03400 DNA repair and recombination proteins [BR:
pop03400
]
7470812
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
7470812
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
7470812
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
7470812
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
7470812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-HC5HC2H_2
RTT107_BRCT_5
zf-RING_10
zf-rbx1
zf-Nse
Motif
Other DBs
NCBI-GeneID:
7470812
NCBI-ProteinID:
XP_002300335
UniProt:
B9GJF8
LinkDB
All DBs
Position
1:complement(37352840..37358553)
Genome browser
AA seq
1029 aa
AA seq
DB search
MIRSAVSESSSHYQISIQRERRASCKMGDPTHLEKMGRELKCPICLSLLDTAVSLTCNHV
FCNSCIVKSMKSGSDCPVCKVPYRRREVRAAPHMDNLVSIYKSMEIASGFNIFVTQNPPP
STKLSDVQKQVGDDTDCGREDIGWICQDMLDEQLKISRQKDSRKLDESNMELCGPITSKP
SFPTKKRVQVPQCSLSGTSAQPEKLQTGSREIKKDDFKNDSSVSRKNPVVDEKGERMLSP
FFWLRDEDGEKSSQHTDMDQLLDITPPNVPTFSDIKDSDDENPPESSSKGAVCGNESHVA
DFFDSEMFEWTQRACSPDIFSSPAKMQAEKTTEMDGIRESKSETPPLDANTNEERSDESK
NCTDTKPRMGISEDILASLSSPIVKSANYQIGRNTSNKRGRNAKDTTLRNCARKNADKGG
RLKGENVSSVSVRENLDQADENTVTDQLPISFDKKQGRSNLKRKKNGKVSRKINLRCKER
KLDSVEINMIKEVHSIHNQMDKDEHAHDYFLPAPLVEDKKPSEIKGKRGKQGEEVKSALC
PEHNQDLKCKKNMEVSLDGIIEDGLVSDHQEGADNVFAEEAQSTENITGNSARATESAEK
VQASLNTRILDDLATLRDHCQENGAAILNCKLNYNIQCAFCLSSEVSEASGEMIHYNNGI
PVAADYNGGSRVIHSHKNCAEWAPNVYFEGDNAINLEAELARSRRIKCCCCGLKGAALGC
YEKSCRKSFHVPCAKLTHQCRWDTENFVILCPLHASCKLPNESKQSQERRKNCISKGQTP
RQYNQVTFKHDINMHKSRKSCLTHDKLVLCCSALTVGEKEIVSEFESLSGVTVLKNWDSS
VTHVIASTDENGTCRRTLKVLMGILKGKWIVNIEWVKACIKAMKLVEEMRYEITADVHGI
RDGPRNGRLRVLNKQPNIFEGFKFYFMGDFIPSYKGYIQDLLVAGGGTILHRKPISGAQG
TLLLDSKPPTFIMYSLEMPDKCDPSKKNMILNRRQSDAEALASSTGAKAVSNKWVLNSIA
ACKLQSLAQ
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgataaggagcgccgtcagtgagtcttcttctcattatcaaatttcaatccagagagaa
aggcgagcgagttgcaaaatgggagatccaactcacctcgagaaaatgggcagagagctc
aagtgccccatctgcttaagtcttcttgacactgcagtctcgcttacatgcaatcatgtt
ttctgcaattcatgtattgtgaaatcgatgaaatcaggttccgattgtccagtctgtaaa
gtgccataccggcgtagagaggttcgcgctgctcctcatatggataacttggtcagcatt
tacaaaagcatggaaattgcttcaggattcaatatattcgtcactcagaatccaccacca
tcaactaaattatcagatgtacaaaagcaagtaggagacgatacggactgtggcagagaa
gatattggttggatttgtcaggatatgttagatgagcaacttaaaatatccagacaaaaa
gattcaaggaaacttgatgaatccaacatggaattatgtggtcccattacttcaaaacct
tcgtttccaaccaagaaaagagttcaggtgccacaatgctctctttcaggcacatcggca
caacctgagaagctacaaactggatcaagagaaataaaaaaagatgactttaaaaatgat
tcatcagtctcaaggaagaaccctgttgtcgatgaaaagggagaacgcatgctatcgcct
ttcttttggttgagagatgaagatggagagaagtcaagtcagcacactgatatggatcag
cttctggatatcacaccaccaaatgttcctactttcagtgatatcaaagactcagatgac
gaaaacccccctgaatcatcctcgaaaggggcagtgtgtggcaacgaatcacatgttgca
gatttttttgacagtgagatgtttgaatggacgcaacgagcttgctctcctgatattttt
tcaagcccagcaaagatgcaggctgaaaaaacaacggaaatggatggaattcgagaaagt
aagtcagaaacacccccactggatgcaaatacaaatgaagaacgtagtgatgaaagcaaa
aactgtactgataccaaaccgcgaatgggtatttctgaagacatactggccagtctatcc
tctccaatagttaaaagtgcaaattaccaaatcgggcgtaatacttccaataagagaggc
aggaatgctaaggacacaacattaaggaattgtgctcggaagaatgcagataagggtggt
aggttgaaaggagagaatgtttcttctgtttcagttagagaaaatttggaccaggctgat
gaaaacacggttactgatcagctgcctatttcatttgataagaaacaaggtcgcagtaat
cttaaaaggaagaagaatggaaaagtgagtagaaagatcaatctccggtgcaaggaacga
aagctggattctgttgagataaacatgattaaagaagtccattcaatacacaaccaaatg
gacaaagatgaacacgcccatgattactttttacctgcccctctggttgaagataaaaaa
ccctcagaaatcaaggggaaacgtggcaaacaaggtgaagaagtcaagtctgcattgtgt
ccagaacataatcaagacttaaaatgtaagaaaaacatggaagtttcattagatggtatc
atagaagatggattagtcagtgaccatcaagaaggtgctgacaatgtctttgcagaggaa
gctcagtccactgaaaatattactggcaactctgcaagggcaactgaatctgctgagaag
gttcaagccagtcttaatactcgaattcttgatgatttggcaacattaagggatcattgc
caagaaaatggagcggccatacttaactgcaagcttaattataatattcaatgtgctttc
tgtctttcttcagaagtctcagaggcttcaggagagatgatccactacaacaatggcata
cctgtggcggcagattataatggtggatccagggtcatacactctcataaaaactgtgct
gagtgggcacctaatgtctacttcgagggtgataatgcaattaaccttgaagctgaatta
gctagaagtcggagaattaagtgttgctgctgtggactcaaaggtgctgctcttggatgt
tacgagaagagttgtcgcaagagtttccatgttccttgtgcgaagttgacccaccaatgt
cgatgggatactgaaaactttgtcatcttatgccctcttcatgcttcttgtaagttgccg
aatgaaagcaaacaatctcaagagaggagaaaaaactgcatttcaaaaggacaaacacca
aggcaatacaatcaagttactttcaaacatgacatcaatatgcataaaagtcggaaatca
tgtttaacacatgacaagttggttctttgctgttcggctctcacagttggagaaaaggaa
attgtttctgagtttgagagtttatctggagttacagtcttgaagaattgggattcaagt
gtcactcatgtcattgcatcaacagatgaaaatggaacatgcagaagaacccttaaagtt
ttgatgggtatcttgaaggggaagtggatagtgaacattgaatgggtcaaggcttgtatc
aaagccatgaaacttgttgaagagatgcgatatgaaattactgctgatgttcacggaatc
agggatggtccacgaaatggaagactaagagtcctgaacaagcaaccaaacatttttgag
ggatttaagttctatttcatgggagattttatcccttcttacaagggatatatacaagat
cttttagttgctggtggaggaacaattctgcacagaaaacccatttcgggagcccaggga
accttgttactggactctaaacctccaactttcataatgtacagcctcgaaatgcctgat
aaatgtgatcctagcaagaagaatatgatattaaaccgaaggcagtctgatgcagaagct
ctagctagttcaaccggagcgaaggcggtaagcaataaatgggttttaaactctattgca
gcctgcaaattacaaagtttggctcaataa
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