Podospora pseudocomata: QC762_305080
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Entry
QC762_305080 CDS
T09797
Symbol
HDA1
Name
(RefSeq) Histone deacetylase hda1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ppsd
Podospora pseudocomata
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppsd01009
]
QC762_305080 (HDA1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_305080 (HDA1)
04131 Membrane trafficking [BR:
ppsd04131
]
QC762_305080 (HDA1)
03036 Chromosome and associated proteins [BR:
ppsd03036
]
QC762_305080 (HDA1)
Enzymes [BR:
ppsd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
QC762_305080 (HDA1)
Protein phosphatases and associated proteins [BR:
ppsd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
QC762_305080 (HDA1)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
QC762_305080 (HDA1)
Membrane trafficking [BR:
ppsd04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
QC762_305080 (HDA1)
Chromosome and associated proteins [BR:
ppsd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
QC762_305080 (HDA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arb2
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
87908710
NCBI-ProteinID:
XP_062744714
LinkDB
All DBs
Position
3:1784258..1787579
Genome browser
AA seq
852 aa
AA seq
DB search
MIGRLLQVPASSRLISDQSLTISSHAFEIGHVAGHCAYHSPISLLLCLAHILKPSALFAL
GTYLFHLPRHYLCLSSRLVANKSQTNLPSLQHLRFASSICWPGPCGIMDVDQDVVMDGTA
DAPSIQSANGYSEPTSKSGGSSLETPNGHSADSSAEGTSSKSGEPGYPERFRRKGILPTG
CCYDDRMKLHANADFGPNPHHPEDPSRIEVIMRIFKKHGLLFTGTDAELIDVINNRPTSY
MWRIPAREATEEEIRTVHRVEHFNWVKALSTKTTHELRDISAMMDQGRESLYVGSMTYEA
SLISAGGAIETCKAVVTGTVKNAFAVIRPPGHHAEYDQPMGFCLFNNVPIAAKVCQKEYP
DICRRVMILDWDVHHGNGIQNMFYEDPNILYISLHVYKNGDFYPGKPDNPMIPDGGMEQC
GAGNGLGKNINIAWHDQGMGDGEYMAAFQKIVMPIGHEFNPDLVIISAGFDAAAGDELGA
CFVSPACYAHMTHMLMSLAGGKVAVCLEGGYNLIAISKSALAVAQTLMGEPPPQMQIPRI
SKEASKVLAKVQAYQAPYWECMRPGIIDVTEMTKNDSSRLHDVIRSSQKEKLSKYGMLPL
YIQRDIIFRSFENQVLVTKGVQSAKKLLLIVHDPPELHGQPDPLDNSLEPHNSWVSDGVA
KYIDWACNNDFGVIDINVPHYITRTDDTEHFTPRMDEKTLQMHLQELMCYIWDNYLQLYD
GADEIYLMGVGNAYLGIKVLLINRNVRNRIAGIVNFVDGSLRPVKSDVDEDLSSWYKDNS
QVYVANDHACWSDPDLTRKVMKRRFGNAIRSEVNGLAPMMNRHFKDVLRFIAEQARKLHG
GETTEDEGNRRG
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggagactgctgcaagtgccagcctccagtcgtctcatctccgaccagtctttg
accatttcatctcacgcatttgaaataggtcacgtagctgggcactgtgcttatcatagc
cctatatctttgctcctctgcctagctcatatcctcaagccttctgccttgtttgccctt
ggcacctatctttttcaccttcctcgacactacctctgtttatcttcaagactcgtcgct
aacaaaagccagacaaacttgccaagtctacaacaccttcgcttcgcctcttccatttgc
tggccaggtccttgcggcatcatggacgttgaccaagatgttgtgatggatgggaccgcg
gatgcgccttctatacagtccgccaatggctactcagaaccaacgtccaagtcgggaggg
agctctctggagacaccaaacggccacagtgccgacagcagtgccgaagggacatcttcc
aagagtggcgagcctggctatcctgaacgtttccgacgaaaagggatcctaccaaccggt
tgctgttacgatgaccgcatgaagctccatgccaacgcggatttcgggccaaaccctcac
cacccagaagacccatcgcgtatcgaggtcattatgaggatcttcaaaaagcacggtctc
ctgtttacgggaacagatgccgaactcatcgatgtcattaacaacagaccaaccagctac
atgtggaggattcccgcaagggaagcgacagaagaagagatccgtactgttcatagagtc
gaacatttcaactgggtcaaggctctgtccaccaagaccacgcacgaactccgcgatatc
tcagccatgatggaccaaggtcgcgagtccctctatgttggtagtatgacatacgaggcc
tctctgatctcggccggtggtgccatcgaaacctgcaaggctgtcgttaccggcaccgtc
aagaatgccttcgctgttatccgaccaccaggacatcacgccgagtacgaccagcctatg
ggtttctgtttgttcaacaacgtaccgattgcggccaaagtctgccagaaggagtacccc
gacatttgccgccgcgtcatgattctcgattgggatgtccaccacggcaacggcattcag
aacatgttttatgaggatcccaacattctctacatatctttgcatgtttacaagaacgga
gacttttacccaggaaagcctgataaccccatgattccggatggcgggatggagcaatgc
ggtgctggaaacgggctcggcaagaacatcaatatcgcgtggcacgaccagggcatgggc
gatggcgagtacatggcggcattccaaaagattgttatgccaattggccacgagttcaac
cccgacctggttatcatctctgccggtttcgacgctgccgccggagatgagctcggcgct
tgcttcgtgtcgcctgcctgttacgctcatatgacacacatgttgatgtctctggcgggc
ggcaaggttgccgtttgtttggagggtggttacaatctgattgccatctccaaatcggcc
ctggctgtcgctcaaaccctcatgggcgaaccacccccacagatgcagattccaagaatc
agcaaggaagccagcaaagtcctggccaaggtccaagcttaccaggctccctattgggag
tgcatgcggccgggcatcatcgacgttacagagatgaccaagaacgactcgtctcgcctg
cacgacgtgatcagatcatcacaaaaagagaagttatccaagtacggcatgctcccgttg
tatatccaacgagacatcatctttaggtcatttgagaaccaagtgttggtgacgaagggc
gtgcagtccgcgaagaagctgctgttaattgtgcatgaccctcccgagctgcatgggcag
ccggatccccttgataactctctcgagccacacaattcttgggtctctgatggtgtggcc
aagtacattgactgggcttgcaacaatgactttggggtgattgatatcaacgtcccccat
tacattacccgaacagacgacacggagcacttcaccccgagaatggacgagaagactctc
caaatgcatcttcaagagctgatgtgttacatctgggacaactacctccagctctacgac
ggggcagacgagatctacctgatgggggtgggtaatgcctacctcgggatcaaggtcctg
ttgatcaacagaaacgtccgcaaccgaatcgctggcatagtaaactttgtggacggcagt
ctccggcctgtcaagtcggacgtggacgaggacttgtcgtcatggtacaaggacaactca
caggtctatgttgcgaacgaccacgcctgctggtcggacccggatcttactaggaaggtg
atgaagaggcggttcgggaatgccatcaggagcgaggtgaatgggttggcgccgatgatg
aataggcattttaaggatgtgctgcggtttattgctgagcaggcgaggaagcttcacggg
ggggagacgacggaggatgaggggaataggagggggtga
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