Pieris rapae (cabbage white): 111001863
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Entry
111001863 CDS
T05162
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
prap
Pieris rapae (cabbage white)
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
prap01009
]
111001863
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111001863
04131 Membrane trafficking [BR:
prap04131
]
111001863
03036 Chromosome and associated proteins [BR:
prap03036
]
111001863
Enzymes [BR:
prap01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
111001863
Protein phosphatases and associated proteins [BR:
prap01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111001863
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
111001863
Membrane trafficking [BR:
prap04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
111001863
Chromosome and associated proteins [BR:
prap03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
111001863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
111001863
NCBI-ProteinID:
XP_022127595
LinkDB
All DBs
Position
20:5733096..5747145
Genome browser
AA seq
1073 aa
AA seq
DB search
MSSASPPTVPGRESGGDAKKTQPPSSIVTRNGARKAKIQTRARTAGTAKPSASLVAAKRK
ALQKKKTTVETVLMDPYQIAMDAKRKVKGPTGFVTEPRMVEHKCLWDDNYPENPMRLISV
INRCHELNLIEQCTEINPEAASKEEILNLHDVSVYSMMEKTHQNNDVEYLEDISSCYDSV
YIHPSTHELALIAAGSTIKLVDHIIKGDIQNGAAFVRPPGHHAMKAEPCGYCIYNNVALA
AKHALQHGLSRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEHGSFWPNLRQSNFDYI
GEGKGAGFNFNVPLNQIGMKDADYLAIWYQLLLPMAFEYQPELILISAGYDAAIGCPEGE
MLITPACYATLTHLLMGVCSRIAVVLEGGYCPTSLAEGAALTLRTLLGHPPPMGEALTEP
TDSIQESILNCIYAHKNHWKCFYQPTYSMYSDLKNVCDIDKEKHTVIVKWEGDETRPEKY
PTRNCYPLQSIETKRNIADRLRQLQLATDLTLPQYPVCYIYDEAMLKHKNICEPGHVECP
QRIMRVHERHMDFGLIDRVHLLTARRATDEDILAVHTEKHLTRLKDLSSMKLRELNNSKD
TYDSVYFHPDSLESATTAAGCVLQMVDSVLSGLAGSGVCVVRPPGHHADKSTPCGFCLIN
NVAIAAQYALKHVKRVLILDWDVHHGNGTQSITLDNEQILYISLHRYDNGSFFPQSRDAD
HTVVGTGKGEGFNVNIPWNKRGMGDAEYIAAFTQVVMPIAREYHPDLVLISAGYDACFGD
PIGGCKVSPECYGVMTHMLRSLAGGRVILCLEGGYNITSTSFAMAMCTKALLGDPIYTHY
DPKACCNWSAIESINDVIKVQKKYWKNLKFQLALPIENVLQKVSPKSTLEDGLANLTIGC
TDGIHCGTDDEAEGSSKNIDSGSKDQSLKTDSSKPKTLVDFLSDNMQAIVDGEMFAVVPL
PGCPHLDSLYAIPSDVKFQQGVKCTDCDHTIENWVCLHCYITACGRHINGHMAAHYSTTQ
HPLSLSLADLSVWCYPCDAYIDNPLLYDAKNNAHKCKFGEEMPWTYKDGIHMD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagcttcaccgccaacagtacctggacgcgagtcaggtggagatgctaagaag
acacaaccaccatctagcattgttacccgcaatggtgcaagaaaagctaaaatacaaaca
cgtgcccgtacagccggtactgcgaaaccttcagcatctcttgtggctgcaaagcggaaa
gcactgcagaagaagaaaacaacagtagagacagttttaatggatccttatcaaatagca
atggatgcaaagagaaaagtaaaaggtcctactggttttgttactgagccacgtatggta
gaacataagtgtttgtgggatgacaactatccagaaaatccaatgcgactcataagtgtc
attaatagatgccatgagttaaatttaatagaacagtgtactgaaataaatcccgaggct
gcatcaaaagaagaaattttaaatttacatgacgtatctgtttattctatgatggagaaa
actcaccagaacaatgatgttgaatatttagaagatatatcatcgtgttatgactctgtt
tacatacacccaagtactcatgagctggctctcatagcagcgggttctacaataaaactg
gttgatcacataataaaaggggatatacagaatggagcagcatttgttaggcctccggga
caccatgccatgaaggcagagccttgcggctattgtatttacaacaatgtggcacttgct
gctaaacatgcacttcaacacggacttagtagaatactgattgtcgactgggatgtacac
cacggccaagcaacacaacaaatgttttataacgatccaagggtcgtatatttctcgata
catcgctatgagcacggatcgttttggcccaatttgcgtcaatccaatttcgactacatc
ggcgaaggaaagggggcgggttttaacttcaatgtacccctgaatcaaatcgggatgaaa
gatgccgactaccttgctatatggtaccagttactcctaccgatggcttttgagtaccaa
ccggagctgatcctgatatcggcgggttacgacgctgcgatcggatgtccggagggtgaa
atgctgataacaccagcatgttatgctacattgacgcatttgctcatgggcgtgtgttcc
cgaatagcagtcgtgttagaagggggctattgccctacgtctttagcggaaggagctgcc
ttaactttacgaacgctgctaggtcacccacctcccatgggcgaagctcttactgagccc
acggactcaattcaagaatcaatcttaaactgcatttacgcgcacaaaaatcattggaag
tgtttctaccaacccacatatagcatgtactcggatttaaaaaacgtatgcgacatcgac
aaagaaaaacatactgttatagtgaagtgggagggagacgagactagaccagagaaatac
ccaacaagaaattgttatccattacaaagtattgaaacgaaaaggaatattgcagataga
ttaagacagttgcagttagcaactgatttaacgctgccccagtatccagtgtgctatata
tatgatgaggccatgttgaaacacaaaaatatttgtgaaccgggtcacgtagaatgtccc
caaagaattatgcgtgtccacgaacgacatatggactttggtctgatagatcgtgtgcat
ttgctgacggcgagacgcgccaccgatgaagacatactcgcagtgcatacggagaaacat
ctaaccagattgaaggacttgtcatcgatgaagcttcgagagctgaacaattcaaaggac
acatacgattctgtgtatttccatcctgattcgctggagagtgctactacggcagctgga
tgtgttttgcagatggttgactcggtactatccgggctagccggatccggggtatgcgtg
gtccgtccacccgggcatcatgcggataaaagcactccctgtggcttctgtctcatcaac
aatgtggccatcgcagcacaatatgccttaaaacacgtaaaacgagtgttaatactcgat
tgggacgtgcaccatggaaatgggacgcagagtattacgttggacaacgaacagatatta
tacatttccctacatcgctacgacaatggttcgttcttcccgcaatcacgtgatgctgat
catacagtggttggaactgggaaaggggaaggattcaacgttaacataccctggaataag
cgcggtatgggcgacgcagaatatatagcggcgttcacgcaagtcgtaatgccgatagcg
agagagtaccatcccgatcttgtgctcatatcagccggctatgatgcctgttttggagat
ccaatcggaggttgcaaagtatcaccagaatgctacggagtaatgactcacatgctcaga
agtttagctggtggccgtgtcatactttgtctggaaggtggttataacataaccagtacc
tcgtttgctatggctatgtgtaccaaagctcttctaggcgaccctatttacacacattac
gatccaaaagcatgttgtaactggtcagccattgaatctataaacgacgtcatcaaagta
cagaaaaagtattggaaaaacctaaagtttcaactggctttaccaatcgaaaatgttcta
caaaaggtctcgccgaaatctacgttagaagatgggctagccaatttaactataggttgc
actgacggtatacactgcggtaccgatgatgaagccgagggtagttcaaaaaatatagat
tccggctcgaaggaccaaagtctaaaaactgatagttccaaacctaagacgttagtagat
tttttatcggataatatgcaagctatagttgatggagaaatgtttgctgtggtaccttta
ccgggatgtccccatttggattcattgtacgcaataccaagtgatgtgaagtttcaacaa
ggcgttaaatgtactgactgtgatcatactattgaaaattgggtctgtcttcattgttat
attacggcttgcggtcgacatataaacggccatatggcagcgcactattctaccacgcaa
catcctctatctctttctctcgctgacctctcggtatggtgctatccctgtgatgcatat
attgacaatccattgctctatgacgccaagaataacgcgcacaagtgcaaatttggtgaa
gaaatgccctggacctataaggacggtatacatatggattaa
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integrated database retrieval system
