Papaver somniferum (opium poppy): 113285057
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Entry
113285057 CDS
T05758
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113285057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113285057
04121 Ubiquitin system [BR:
psom04121
]
113285057
03036 Chromosome and associated proteins [BR:
psom03036
]
113285057
03400 DNA repair and recombination proteins [BR:
psom03400
]
113285057
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113285057
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
113285057
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113285057
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113285057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
RTT107_BRCT_5
zf-RING_6
BRCT_2
zf-RING_UBOX
zf-HC5HC2H_2
zf-RING_5
zf-C3HC4_4
zf-RING_10
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
113285057
NCBI-ProteinID:
XP_026389982
LinkDB
All DBs
Position
1:complement(45666434..45672155)
Genome browser
AA seq
1170 aa
AA seq
DB search
MEALVHLEKMGRELKCPICLGLLKSAVSLTCNHLFCDLCIKKTMKSDSHCPVCKVPFGRR
EVRSAPNMDNLVSIYKSMEVASGINTLASQTTPPTDGSDGIVCAQNKPQYAAHSDSPQTR
GKGKKKRKFKGKTSKDCDTADNVSQPSQEPTFPAKKRVQVPQCLLSETPMRSENFAVGRL
DEISEDGPGSSLFKSKGKSFSNDKGEPAFVPFFWLREDNPYEDVEKPSGQLMTSDDSKDT
PRKIPSFSDLKDSDDESPTKSIGNGEEKTESKIPDLFDSEMFEWTQRPCSPELFSTPEKT
KAGYKELNTIEDGECVVASPTQGAPTGEAVASETVKAVNCEQANENIDEKLAPVKAKSSK
NRNKSKKSKRKSKRNTGIAKEKCAKISTDEVLGDVCIDLGEVGEVSNESVKCATNSTATN
VRNKICSKNKKARFNSFDANKVTDELHEAIEANSENHATKETATRSPTSLDDQHTKSIHK
NSEKIKKLDIQLKRTNARSLKNKTVAAAAVEVVEEVQKNENQENGKANTKSPAQTDLQVD
PPRTSELEERARNKPRNAKILGKRNCAREFGNQKRLNFTDDSAKGVSGGEVAVASSKVVD
PSKTSELEKRTTDKHRDTKIVGDKSCMQELREGKRVKFSTDNCVKTGAVGKVLDESNKAV
AKENQTSKQLQENSDNASRTKKVLSASKAMLLQKCENVPVKIQESREGKRVKFSTDNCVK
TGSVGKVLDESNKAVAKENQTSKQLQESSDNSSRTRKVLCASKAMSLQKCENVPVKIQCA
FCQSSTESEATGKMLHYVNGKPVADYNKGSHVIHSHSNCTEWAPNVYFEKDTAVNLGTEV
ARSKRIKCSCCGIKGASLGCYENSCRKSFHVPCAKMVPQCRWDTENFVLLCPIHSSSKLP
NEVAGSVGQRRKISIPKTGESEVREAQVVVQHGLNTSQAWKTLGSSKKWVLCCSGLTDEE
KEIVSEFTRITGVPVSKTFGTNVTHIIASTDTSGACKRTLKFLLGILDGKWILNIDWIKA
CLQAMEPVAEEQYEVKVDIHGIEDGPRLGRLRVQKKQPKLFSRLNFYFFGEFVPSYKGDL
QNLVAAAGGTVLHRKPIKGDLGLSSSDSSTSTFIIYSLDVPDECDPRRKSTICNRRKDEA
RALAGSSGTKFAGHPWLLDSIAACKLQRLT
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgttagttcatttagagaagatgggtagagagttaaaatgcccaatctgcttg
ggtttattgaaatcagcagtttctctcacctgcaatcatttgttttgcgatttatgtatt
aagaaaactatgaaatcggactctcattgtccggtgtgtaaagttccattcggacgaaga
gaggttcgttcggctccgaatatggataacttggttagtatttataagagcatggaagtt
gcttcaggaatcaatacactagccagtcaaactacaccaccaactgatggatcagatgga
attgtttgtgcacagaataaacctcagtatgctgcccattctgatagtccacaaactcga
ggcaaaggaaagaagaagaggaaattcaaagggaaaacttcaaaagattgcgatactgct
gacaatgtatctcaaccaagccaagaacctacctttccggcaaagaaaagggttcaagtt
ccacaatgccttttatctgaaaccccaatgaggtctgagaactttgcagttggaagactt
gatgaaatttctgaagatggacctgggagtagcttatttaaatcgaaagggaaatccttt
tctaatgacaaaggggagcctgcatttgtgcccttcttttggttgagagaagataatcct
tacgaagatgtagagaaaccaagtggtcagctgatgacctctgatgattccaaagatact
ccacgaaaaattcctagcttcagtgatctaaaagattctgatgacgagagccctactaaa
tccatcggaaatggtgaagagaaaaccgaatccaaaattccagacctttttgacagtgag
atgtttgagtggacacagagaccttgctcccctgagcttttttcaacacctgagaaaact
aaggctggatacaaagaactgaacacaattgaagatggtgaatgcgtggtagcttcccca
actcagggtgcacctactggtgaagctgttgcttcagaaacagtgaaagccgtcaactgt
gagcaagcaaatgagaacatagatgagaaacttgcacctgtaaaagcaaaaagttccaaa
aatcggaacaaaagtaagaaatccaaaagaaagagcaaaagaaacacggggattgctaaa
gagaagtgtgcaaagatttctactgatgaggttcttggagatgtttgcattgatctgggt
gaagtaggtgaagtctcaaatgaatcagttaaatgtgccactaacagcactgctacaaat
gtgagaaacaaaatttgcagtaagaacaagaaggctagattcaacagtttcgatgctaac
aaagtaacagatgaattacatgaagcgattgaagcaaacagtgagaatcatgctactaag
gaaactgctaccagatcgcctacgtcattggatgaccaacatacaaagtcaattcacaaa
aacagtgagaaaataaagaagctcgacattcaactcaaacgaactaatgctagaagtttg
aaaaacaaaaccgtagctgctgctgcggtagaggtggtagaagaagttcaaaagaatgaa
aaccaagagaatggcaaagcaaacacgaaatcgcctgctcagaccgacctacaagttgat
cctcctaggacgtctgaattggaggagagagctagaaacaagcccaggaacgccaaaatc
ttaggcaagagaaattgtgctagagaatttggaaatcagaaaagattgaatttcactgat
gatagtgcgaaaggtgtatctggtggtgaagttgcagttgcttctagcaaggttgttgat
ccttcaaaaacatccgagttggagaagagaaccactgacaaacacagggacaccaaaatt
gtaggtgacaagagctgcatgcaagagttgagagaagggaagagagtgaagttttctact
gataattgtgtgaagacaggagctgtggggaaagttctggatgagtctaacaaagctgtt
gcgaaggaaaatcaaaccagtaaacaattgcaggagaattctgataatgcaagcagaact
aaaaaagtcctttctgcgtctaaggctatgttactacagaaatgtgagaatgttcctgtt
aaaatccaagagtcgagagaagggaagagagtgaagttttctactgataattgtgtgaag
acaggatctgtggggaaagttctggatgagtctaacaaagctgttgcgaaggaaaatcaa
accagtaaacaattgcaggagagttctgataattcaagcagaactagaaaagtcctttgt
gcgtctaaggctatgtcacttcagaaatgtgagaatgttcctgttaaaatccagtgtgca
ttttgccaatcatctaccgagtcagaggctacagggaagatgttgcactatgttaatggc
aagccagtagctgattacaacaaggggtctcacgtcatacactcccactcaaattgcact
gaatgggcgccaaatgtatactttgaaaaggataccgcagtcaatcttggaactgaagta
gcaagaagcaaaaggattaagtgtagttgctgtggaatcaaaggggcatctcttgggtgc
tacgagaatagctgtcgcaagagctttcatgttccttgcgcaaagatggttcctcagtgt
cgatgggatactgagaactttgtgctgctatgccctattcattcatcttccaaattgcct
aacgaagtcgcaggatccgtaggtcaaagaagaaagatatccattccaaaaacaggagaa
agtgaagttcgagaagcacaagtggtggttcagcatggtcttaatactagccaagcatgg
aaaactcttggttcctcaaaaaagtgggttctttgttgctcaggcctcacagatgaagag
aaggaaattgtttctgagttcacaaggattaccggtgtcccagtatcaaagacttttggc
actaatgttactcatatcattgcttcaactgatacgagtggagcatgcaaaagaacccta
aaattcttgctgggcatcttagatgggaaatggatactgaatattgattggattaaagct
tgcttacaagccatggagcctgttgctgaggagcaatatgaagtcaaagttgatatccat
ggaatcgaggacgggcctcgactaggaagactacgagtccagaaaaagcaaccaaagctt
ttcagtcggttgaacttctacttctttggagaatttgtgccttcttacaaaggagacctt
caaaatcttgttgcagctgctggaggaactgttttacacaggaaacccatcaagggagac
ctaggcttatcatcgtctgattcatctacgtcaaccttcataatttacagccttgacgta
cctgatgagtgcgaccccaggagaaagagtacgatctgtaatcgcaggaaggatgaagct
cgtgctttggcaggttccagtggaacaaaatttgctggccatccatggttgttggattcc
attgctgcatgcaagttgcagcgtctaacttaa
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