Papaver somniferum (opium poppy): 113298340
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Entry
113298340 CDS
T05758
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113298340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113298340
04121 Ubiquitin system [BR:
psom04121
]
113298340
03036 Chromosome and associated proteins [BR:
psom03036
]
113298340
03400 DNA repair and recombination proteins [BR:
psom03400
]
113298340
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113298340
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
113298340
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113298340
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113298340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_UBOX
zf-RING_6
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-HC5HC2H_2
zf-RING_10
PTCB-BRCT
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
113298340
NCBI-ProteinID:
XP_026402841
LinkDB
All DBs
Position
7:complement(124298968..124303385)
Genome browser
AA seq
664 aa
AA seq
DB search
MADSASGYLNRFLNPWVLHFQKLGLELKCPLCLDLLNKPILLPCQHIFCSSCISNSSQFR
QNCFVCQSPYADLDLRSAAHMENIVNIYKNMDAAFSTSRSQSCSQSHTSCTHSIIDGKDP
MTQTLDSANTVAKMQKAVKETFPNKQVQNPLCQTENVGPLVSGFKRKNSVTKIGQHTLPD
SPPSFGVSKDSDDDSSGHVGQNGAERLQTMDKTAEELENQANCDRETKKQKLESKSYNVS
ATGMNPKPGYSDSDGGCKSEGTLFGAQQASTSVCLDDNSAFVCAFCQTSKISEGSGSMLH
IASGEEVVGDEASQPDVIHVHRKCIDWAPQVYYVGDTVKNLELELARGSKLKCSCCGLKG
AALGCFIRSCRNTYHVPCAFALPGCRWDDEGHQMLCPSHSHNKFPHEKTKKGKKLTKNNT
STVQRENGQTKVWAASAAATSKLTLCGSSLSVEEKNLLANFARISGATISKNWKPNVTHV
IASTDERGACSRTLKFLMAILDGKWVLKMDWIKACIEAMDLVDEEPYEVGLDIHGCVDGP
RNGRLRVSEGAAKLFSGLHFYFSGEFVPSYKESLQELVLAAGATVLTKNPLVSGISNEGE
RSLKTLVVYSLDLPPNLESGEASFLIIEERLREAEALAEQFGTLVIGHTWILESIAASKL
EAVA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcagattctgctagtgggtatctcaatcggtttctaaatccatgggttcttcacttc
caaaaactcggtttagaactcaaatgccccttatgcttagatctcctcaacaaaccaatt
ttacttccatgccagcatattttctgcagttcttgtatttcaaactcctcacagttcagg
caaaattgctttgtctgccaatcgccttacgcagatctagatctaaggtcagctgctcac
atggaaaacattgtcaatatctacaaaaatatggatgcggcgtttagcacaagtcgctcg
caatcctgttctcagtctcatacttcttgtactcactcaatcattgatggaaaagatcct
atgactcaaacccttgattcagctaatacagttgctaagatgcagaaggctgtaaaggag
acatttccaaacaaacaagttcaaaatcctttgtgccaaactgaaaatgttggaccattg
gtttctggatttaaaaggaaaaatagtgtgaccaaaattggtcaacatacgttacctgat
agccctccatcctttggtgtttctaaggattctgatgatgatagtagtggtcatgtcggt
caaaatggtgctgagaggttacaaacgatggacaaaacagcagaagaattagaaaatcaa
gcaaattgtgacagagaaacaaagaagcaaaagttggagtccaagtcttataatgtgtct
gctactgggatgaatcctaagccagggtactctgattcagatggtggatgtaaatcagaa
ggaaccctttttggtgcacaacaagctagtacttcagtctgtctggatgacaactcagct
tttgtctgtgcattttgccaaacctcaaaaatatcagagggttctggatccatgctacac
attgccagtggagaagaagtagtaggggatgaggcatcgcaaccagatgtgatacatgtt
caccggaaatgcattgactgggcgcctcaagtgtattatgttggagatactgtaaagaac
ttggaactggagctcgcaagaggttcaaagctcaaatgtagctgttgtgggctgaagggt
gcagctcttggctgctttatacgttcctgcaggaatacatatcatgttccttgtgcattt
gcccttccaggttgccgctgggatgatgaaggccatcaaatgctttgtcccagtcattct
cataataagtttccacatgagaaaaccaagaagggaaagaagctaacgaaaaacaatact
tcaactgttcaaagggaaaatgggcaaacaaaggtttgggctgcatcagctgctgctact
agtaaattgactctctgtgggtcttccctttcagtcgaagagaagaatctattggccaac
tttgctagaatatctggcgcaaccatttccaaaaattggaagccaaatgtgacccatgtg
attgcatccactgatgagaggggtgcttgcagccgcactttaaaattcctcatggccatt
ttagatggaaaatgggttctcaaaatggattggattaaagcatgtatagaagcaatggat
ttagttgatgaagaaccttatgaagttggacttgatattcatggatgtgtggatgggccc
cgaaatggtagattgcgagttagtgaaggggcggcaaaactcttcagtggcctgcacttc
tatttcagtggtgaatttgttccatcgtacaaagaatcccttcaagaactggttttagct
gcgggagctactgtattgacaaagaaccctttagtttcagggattagtaatgaaggagaa
cgttctttgaagactttggttgtttatagtcttgatctccctccaaaccttgaatcaggg
gaagcatcttttttgattattgaggaaaggctcagagaagcagaagctcttgctgaacag
tttggaaccttggttattggtcatacatggatattggaatcaatagcagcttctaagttg
gaggcagttgcttaa
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