Polyodon spathula (Mississippi paddlefish): 121305482
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Entry
121305482 CDS
T07273
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121305482 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121305482 (hdac6)
04131 Membrane trafficking [BR:
pspa04131
]
121305482 (hdac6)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121305482 (hdac6)
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
121305482 (hdac6)
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121305482 (hdac6)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121305482 (hdac6)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121305482 (hdac6)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
121305482 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
121305482
NCBI-ProteinID:
XP_041093058
LinkDB
All DBs
Position
43:complement(2033102..2051149)
Genome browser
AA seq
1165 aa
AA seq
DB search
MDSIPDPSNQRGLRGSSRSPRSPGSASQSQKKVTKKGSQSSRLQEEKKKGRMNRSRGEEE
MSKQLGHLDLGSSPVGEGTGLAFTEKCKKYSCLWDASHLECPDRLTAVMEKVEQYGLLSR
CARVEERSAVEDELLLVHSSEYVALMRSTEHMGQEELRSLSDTYDSIYIHPESFRCASLA
AGSVLQLVDRVMAAQLRNGFSIARPPGHHAQRDRMNGYCMFNNLAIAARYAKQRYHLKRV
LIVDWDVHHGQGTQYIFEDDPRPWAGENRYEDGRFWPHLQESDSTAIGKGKGEGFNINLP
WNQPGMSDADYISAFQQLLLPVAYEFRPELVLVAAGFDSVVGDPKGEMSATPACFAHLTH
MLQSLAQGRLVLSLEGGYNLRSTAEGVCACLKMLLGDPCPRLESPFSPCQSALDSVSKTL
AACSKYWKSLQVLDLAQETGSCGLNPDPAVESDAVLDRSMREVMRGLPSARTGLVYDERM
KEHHNMWDSHHPELPQRISRIFSRHEELGLVSRCQRIPARHATEEELTLCHGAEHITRMK
STEGMKPRDLHRQSEEYNSIFISPQSYKSALLAAGACFRAAEAILTDKVITQGERGRHRQ
RHTETEREREGVWGGGGRRGPVLPMRHRIARPGDLWYGLALSPDAPKTKKLCPASLNWFL
VCRVLILDWDVHHGNGTQHIFEDDPSVLYVSLHRYDNGLFFPSSLDAGSDRAGTGRGLGY
NVNIPWNASRMGDPEYMAAFQRVVMPIAYQFNPELVLVSAGFDAARGDPLGGCLVTPECY
GHMTHMLQGLAGGRVLIALEGGYNLSSISDSMSACTSVLLGDSLPDLGQLTPPHPSAVQS
LHSVLHTHRAHWSALRLAVPERVPSRLTTPRHKGQRAKTSPRQEVTPQKRPPGEEAHPLT
PEGATTPDNSPSVSPAAVATVADDSVDQITAGLQSVALGSSPETQTNQSPASVAVGGARR
KVKPPSPESRGKGQRKRSGGGESSKGTPSTPGKTEVVKSKENVVKIENTEPSSLPALAGE
DKETLLASGWSNPLKSQSVCEVFCKTQDVEGGTMFAVEPLPWCPHLETVNPLPAAGLDVF
APCRDCGSEAENWVCLVCYQVLCGRYVNQHMMEHSQNSAHSLVLSFSDLSAWCYDCEAYI
HNQVLFDVKNAAHRIKFGESMPEFH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggattccatacctgatccttccaatcagaggggactgcgaggctcctcccgctcacct
aggtcaccaggctccgcctcccagtcccagaagaaagtgactaagaagggaagccagagt
tcgaggctgcaggaagaaaagaagaaaggaaggatgaacaggagccgcggagaagaggag
atgagcaagcagctcggacacctggatctcgggagctctcctgtgggcgagggtaccggg
ctagcatttactgaaaaatgcaaaaagtacagctgtctgtgggacgccagccacctggag
tgtccagacagactgaccgcggtgatggagaaggtggagcagtacgggctgctgtcgcgc
tgtgcccgggttgaggagaggtctgcagtggaagatgagcttttactggttcacagctcg
gaatatgtggcactgatgagatccacggagcacatgggacaggaggagctgcgatcgctt
tctgacacatacgactccatctacattcaccctgagtcttttcgctgtgccagcctggca
gccgggtccgtgctgcagcttgtggacagagtgatggcagcccagcttcgaaacggcttt
tctattgccagaccgcctggtcaccacgcccagagggaccgaatgaacggctactgcatg
tttaataacctggccatcgccgcgcgctacgccaagcagagataccacctcaagagggtc
ctcattgtggattgggatgttcaccatggtcaaggaacgcagtatatatttgaggatgat
cccagaccttgggcgggagaaaaccggtatgaagacgggcgcttttggccccacctgcag
gaatctgacagtactgcaatcggcaaaggaaaaggagagggctttaacatcaacctcccc
tggaaccagcctggaatgagcgatgctgattatatctcagccttccaacagcttctcctg
cccgtcgcgtacgagttcaggcctgagctggtgctggtcgctgctgggttcgactctgtg
gttggggatccaaagggggagatgtctgcgacaccagcgtgcttcgctcacctcacacac
atgctgcagtcgctggcccagggcaggctcgtcctatctttggaggggggctacaatctg
cggtcaaccgcggagggggtgtgcgcctgtttgaagatgcttttgggggacccctgtccc
agactggagtcccctttctctccctgtcagagtgctttggactcggtctccaagacattg
gctgcctgttccaagtactggaaaagcctgcaagttctggacctggcccaggagactggg
agctgtggtttgaacccggatcctgcagtggaatctgatgcagtgctggaccgctctatg
agggaggtgatgagggggctgccctcggcacgcactggcctggtgtacgatgagaggatg
aaggagcatcacaacatgtgggacagtcaccacccagagctgcctcagagaatctctcgt
atcttctcccgtcacgaggagctgggattggtcagccgttgccaacggataccggctcgc
cacgccactgaggaagagctcaccttgtgccacggcgctgaacacatcaccaggatgaag
tcgacggaggggatgaagcctcgggacctgcacaggcagagcgaggagtacaactccatc
ttcatcagcccacagtcctacaagagcgccctgctcgctgcgggagcctgcttcagagct
gcagaggccatcctcacggacaaggtcatcacacagggagagagggggagacataggcag
agacacacagagacagagagagagagagagggggtttggggggggggggggaggaggggt
ccagtccttcctatgcgccaccggatagcaaggccgggggacctgtggtacgggctcgct
ctgagcccggacgcccccaagacaaagaagttgtgcccagcatcccttaattggtttctc
gtttgcagggttctgattctggattgggacgttcaccacggcaacggaacgcagcacatc
tttgaggacgaccccagcgtgctatatgtgtcgctgcatcgctatgacaacgggctcttc
ttcccctcctccttggatgcgggttccgaccgggcggggacggggaggggtctggggtac
aacgtcaacatcccctggaacgccagcaggatgggcgacccggaatacatggcagccttc
cagagagtcgtcatgcccattgcataccagtttaacccggagctggttctggtctcggct
ggattcgacgccgctcgcggtgacccgctgggcggttgcctggtcaccccggaatgctac
ggtcacatgacccacatgctgcagggcctggctggaggacgagtgctgatcgcgctggag
ggtgggtacaacctgtcctccatctctgattccatgtccgcgtgcaccagcgttctcctg
ggggacagcctccccgacctgggccagctgacccctccccaccctagcgctgtccagtcg
ctgcacagcgtcctgcacacgcacagagctcactggagcgccctgcgactggcggttcca
gagagagtgccgtcccgcttgaccacccccaggcataaaggtcaaagggccaaaacgtca
cccagacaggaagtgaccccgcagaaacgcccgcccggagaggaggcacaccctttgacc
ccagaaggggcgacgacccctgacaacagcccctccgtgagccctgcggccgtggcaacg
gttgccgacgactctgttgatcaaatcacagcgggcctgcagtcagtggccctcggaagc
agccccgaaactcagaccaatcagagccctgcttccgtggctgtgggcggagcccggagg
aaagtaaagcccccctcccctgagagcaggggaaagggtcaaaggaagaggtcgggcggg
ggtgaaagttcaaagggcacaccgtcgaccccagggaaaacagaggtggtgaaatcgaaa
gaaaatgtggtgaagattgaaaacacagagccctcctcccttcctgctcttgccggggaa
gataaggaaacgctgctggcttctggctggtcgaacccgctgaagtctcagtcagtctgt
gaggtgttctgcaaaacccaggatgtggaagggggaacgatgttcgcggtggagccgttg
ccatggtgcccgcacctggagaccgttaaccccttgcctgccgcggggcttgatgtgttc
gcgccgtgcagagactgtgggagcgaggctgagaactgggtctgtttggtgtgctatcag
gtgctctgtggtcgctatgtcaaccagcacatgatggaacacagccagaactctgcccac
agcctggtgttaagcttctctgacctgtcagcctggtgttatgactgcgaggcttacatc
cacaaccaggtactttttgacgtgaagaacgcagcgcacaggatcaagttcggagagagc
atgccggaatttcattaa
DBGET
integrated database retrieval system
