Pseudoliparis swirei (Mariana hadal snailfish): 130203047
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Entry
130203047 CDS
T09868
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130203047 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130203047 (hdac6)
04131 Membrane trafficking [BR:
pswi04131
]
130203047 (hdac6)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130203047 (hdac6)
Enzymes [BR:
pswi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130203047 (hdac6)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130203047 (hdac6)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130203047 (hdac6)
Membrane trafficking [BR:
pswi04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130203047 (hdac6)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
130203047 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
130203047
NCBI-ProteinID:
XP_056284914
LinkDB
All DBs
Position
12:19757348..19783710
Genome browser
AA seq
740 aa
AA seq
DB search
MLYVRRSVRRGVQFQPQLVLVSAGFDAAVGDPKGGMCVTPQCFHILTHMLMSLAEGRLVL
ALEGGYDLQSTAGGAAACVRALLGGACPPLTPPTAPSDSALRSISQAVVSLSPHWASLQT
LGGGPLAEGPVARATAERQSSERTGGAAPSVATVTGLVYDEKMMQHLNMWESHHPEQPQR
IFKIFAKHQQLGLVDRCQRIPARLATEEELSRCHSQQLILLMESSVLMKNRDLHKLGHEF
NSVFFSQQSNTAARLAAGGVLTAVERVLSGQVSRGVAIVRPPGHHAERDSPCGFCFFNTA
ALAARHAQNLSHDAPLRVLIVDWDVHHGNGTQHLFEDDDSVLFISLHRYDNGTFFPSSED
AAPDRVGVSKGAGFNVNVAWSGGRMGDSDYLAAFHSVVMPIATEFNPGLVLVSAGFDAAR
GDPLGGYHVTPEGYAHLTHMLLSLAGGRVLLILEGGYNLTSISDSMAMCTSVLLGDPPPP
LVMPLPPPHHSAVATINEVIRHHAPYWMSLRIRIPASVRSAPSAPRHRGKRSSQGKGKKS
ETSAHEPPPPPAGPDAAQAERGLQQLTQGLAGLDIGQTSANHTAAMSNVVGGARPKVRLS
QEEVTGEGEATPEQSQSAESTLLQPQTPLFVVEPLSWCPHLDAVKPLPPSGIDVFQSCQD
CGSSAENWTCLTCYQVLCGRYVNEHMVTHGVVSEHPMVLSACDLSVWCYLCESYVHHQIL
FEAKNAAHCCKFGKEIPPWS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgctttatgtgaggaggtctgtgcgccgaggcgtgcagttccagcctcagctggttctg
gtctcggctggtttcgatgcagcagtcggagatccgaagggggggatgtgtgtgactcct
cagtgttttcacatcctgactcacatgctgatgagtttggcagaaggtcgtctcgttctc
gctctcgagggaggttatgacctgcagtcgacagcagggggcgctgcagcctgtgtcaga
gctctgctgggaggagcctgtcctcctctgaccccgcccactgctccctctgacagtgcc
ctgcggtccatctcccaggcggtggtgtctctctctcctcactgggcgtcgctgcagaca
ctgggaggcggcccattggccgagggccccgtcgccagagcgaccgccgagcggcagagc
tcagagcggacggggggcgcggctccctccgttgccacggtaacgggtctggtttacgac
gagaagatgatgcagcacctgaacatgtgggaaagccatcatcccgagcagcctcagaga
atctttaaaatcttcgccaaacatcagcagctgggattggtcgaccgttgccagcggata
ccggctcgcctagcaacagaggaggagctgtccaggtgtcacagccagcagctcatcctg
ctcatggagtcctcggtgctcatgaagaacagagatctacacaaactgggtcacgagttc
aactccgtgttcttcagccagcagagcaacacggcggctcggctggcagccgggggggtg
ctgactgctgtggagagggtgctgagcggacaggtgagtcggggcgtggccatcgttcgc
cctcccggtcaccacgcggagagagattccccgtgtgggttctgtttcttcaacacggca
gctcttgccgcacgccatgcccagaacctttcccatgatgcaccgctgcgagtcctcatc
gtggactgggacgtgcaccacggcaacggcacgcagcacctgttcgaagacgacgacagc
gtcctgttcatttccctccatcgctatgacaacgggacgttcttcccgtcctcggaggac
gccgcccccgacagggtgggcgtgtccaagggggcggggtttaacgtcaacgtggcgtgg
agcggtgggaggatgggggactcggactacctggcggcctttcacagcgttgtcatgccg
atcgccaccgagttcaacccgggtctggttctggtgtcggccggtttcgatgctgcgcga
ggagacccgctgggggggtaccatgtgaccccggagggatacgcccacctcactcacatg
ctgctgtcactggccggggggcgtgtcctcctcatcctggagggaggttataatttgacg
tccatctctgactccatggcgatgtgcaccagcgtgttattaggagatcctcctccaccc
ttggtgatgcccctcccccctcctcatcacagcgccgtggcaacgatcaatgaggtcatc
cgacaccacgccccctactggatgtctctgaggatacgcatcccagcgtcggtgcggtcg
gccccgtcggccccgaggcatcgtgggaaacgtagttctcaaggaaaaggcaagaagtcg
gagacgagcgcacacgaacctccgccgccgcctgcggggccggacgccgcccaggcggag
cgcggcctccagcagctcactcaggggttggccggtctggacatcggtcaaacctcagcc
aatcacacggccgctatgtccaacgtggtgggcggggccaggccgaaggtccgtttgagt
caagaagaggtcacaggtgaaggtgaagcgacacctgagcagagccaatcagcagagagc
acgctgctgcagcctcagacccctctgttcgtggtggagcctctgtcctggtgtcctcac
ctggatgccgttaagcccctccccccctcaggcatagacgtcttccagtcgtgtcaggac
tgcggctccagcgctgagaactggacctgtctcacatgctaccaggtgttgtgtggccgt
tatgtaaatgagcacatggtgactcacggcgttgtgtctgaacacccgatggtgctgagc
gcctgtgacctgtctgtgtggtgctacctgtgtgagtcctacgtccaccaccagattctg
tttgaagcgaaaaatgcagctcactgctgcaagtttggaaaagagatccctccatggagc
tga
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