Panicum virgatum (switchgrass): 120665117
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Entry
120665117 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120665117 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120665117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120665117
04121 Ubiquitin system [BR:
pvir04121
]
120665117
03036 Chromosome and associated proteins [BR:
pvir03036
]
120665117
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120665117
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120665117
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
120665117
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120665117
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120665117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-HC5HC2H_2
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
120665117
NCBI-ProteinID:
XP_039800487
LinkDB
All DBs
Position
3N:22263414..22268403
Genome browser
AA seq
744 aa
AA seq
DB search
MSATPGSIMIKTFGEMDNDNVDVLKQGQMQSQVLKRGKMQGDVLKQRQMQSDKLTRQFNS
PTKPSPAVAGATKGQNEKNVVEDAKISPPRVKRNKTGPNQLSYKKNNVSAKHVLPEDSGG
TTELKRLLTPINLFEDECIFCHSFRTSQFHKSMVCYLKGRIVSIEEGNSSNAIYVHKNCM
EWAPRVWFKGDVIMNLESEIRRASRLRCGRCGLQGAALGCYDNDCKRSFHVPCALQIACR
WDVGERHVLCPEHVSKTLPCDKLYTRTTENANSSSLHQSQCSYKEDSFTDFEEEGQQSDQ
LKTTRSFLPVGPCTDKEGKLDNRHRENQQTDKLNTSNAALFPQSPYIHKEVILDNHQREN
QQTDQFNILNPLHLSQSKCSPKEGISTNSSTDGKQIDQLDTSSFSSLPLGKHLYEEEICM
NCERDDQRAHKHNTSNLPSLPKRSHHSSCHPDEEGISSVYKGEEIKAYQPDTSSFPSDQL
VLLGLSLTASEKDSLQEFACWTNARLMKEWGENVTHAIVGKGAGTSWSRSFEALMAILLG
KWVVHFEWIADCSSEMTRRPEASYEVALSMDPLRTIDGPKKGRIRATKGACYYVIWHWQS
IEKRSYIPGQNLTAAIRLFTSRLQAPKLFAGLRFCLSAYMDPDGRHRVRNLIAAAGGQVL
REGFLDLLLGDSDGSLVGLYFVFDGDAPGEFSTSTLRKEVEEARKHAAAGARVISHLRLL
DAVAAYDAEILDPAEREEKDGFAS
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctactcctggcagcataatgatcaagacgtttggagaaatggataatgataat
gttgatgtccttaagcaaggtcaaatgcagagccaagtccttaaacgaggtaaaatgcag
ggtgatgtccttaagcaacgtcaaatgcagagcgataaattgaccagacaatttaactct
ccaactaagcccagccctgctgttgctggggctacaaagggtcaaaatgagaaaaatgtg
gtagaagatgcaaaaatttcaccccctcgtgtcaagcgaaataagactggaccaaatcag
ctttcgtataaaaaaaacaatgtatctgcaaaacatgtcctgcctgaagactctggaggt
actactgaattgaagagactgctaactccaattaacttattcgaagacgaatgcattttc
tgccattcatttagaacaagccagttccataagtcgatggtatgttatctaaagggaaga
attgtgtccattgaagagggcaactcatcaaatgccatctatgtccataaaaactgcatg
gagtgggctcctagagtgtggtttaagggtgacgttattatgaacttggagtcagaaatc
agacgtgcttcaagactgagatgcggaagatgtggactccagggagcagcccttggttgt
tatgacaatgattgcaaaaggagttttcacgttccatgtgcacttcagattgcttgtcgc
tgggatgttggtgaacgtcatgtgctgtgccctgaacatgtttcaaagacattaccatgt
gataagctgtatacacgtacaacggagaatgccaattcttcttccttgcatcaaagccaa
tgctcctacaaagaagattctttcaccgatttcgaagaggaaggccaacaatctgaccag
cttaaaaccacaaggtctttcttgcctgtgggcccatgtacagacaaggaaggaaaactt
gacaatcgtcatagggaaaatcaacaaacagataaactcaacacttctaatgctgcatta
tttcctcagagcccatatatacacaaggaagtaattcttgacaatcatcaaagggaaaat
cagcaaacagatcagtttaacattttgaatcctttgcacttgagtcaaagcaaatgttct
ccaaaagaaggaatttccaccaatagctcaacagatggcaaacaaattgatcagcttgat
acctcaagtttttcttccttgccactggggaaacatttatatgaagaagaaatttgtatg
aattgtgaaagggatgatcaacgagcacataagcataacacgtcaaatttgccctcattg
cctaagagatcccatcattccagctgtcatccagatgaagaaggaatttccagtgtttac
aaaggggaagaaataaaagcatatcagcctgacacgtcaagcttcccttctgatcagttg
gttttgcttggattgtctttgactgcgtcagagaaggattccttgcaggagtttgcatgt
tggaccaacgcgaggctgatgaaagagtggggcgaaaatgtgactcatgccatcgtgggc
aaaggtgctggcacctcatggagcagatcatttgaagctctcatggccatactgcttggg
aaatgggttgtccatttcgaatggattgcggactgctcctcggagatgactcggcgtcca
gaagcttcttatgaggtagcactcagcatggatccactccggacaatcgacgggccgaag
aagggaagaatccgagcaaccaaaggggcatgttactatgttatctggcactggcagtca
attgaaaaaagaagttacattcctgggcaaaacctgactgctgccattcgattgttcacc
tcgcgcctgcaggcaccgaagctgttcgcgggactgcgcttctgcctcagcgcctacatg
gaccctgacggcagacaccgcgtgcgcaacctcatcgcggctgcgggagggcaggtcctg
agggaagggttcctggacttgctgctcggagactccgacggctcgttggtgggtctgtac
ttcgtcttcgacggcgacgcgcccggagaattttccacgagcacgctgcggaaggaggtg
gaggaggcgaggaagcacgcggctgcgggggcgcgggtgatcagccacctgaggttgctt
gacgccgtcgcggcgtatgacgcggagatcctggaccccgctgaacgtgaagagaaggat
ggcttcgcgtcgtaa
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