Panicum virgatum (switchgrass): 120682209
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Entry
120682209 CDS
T07260
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120682209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120682209
04121 Ubiquitin system [BR:
pvir04121
]
120682209
03036 Chromosome and associated proteins [BR:
pvir03036
]
120682209
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120682209
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120682209
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
120682209
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120682209
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120682209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4
zf-RING_UBOX
RTT107_BRCT_5
PTCB-BRCT
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-RING_10
zf-RING_6
zf-RING_2
Spore_III_AB
Motif
Other DBs
NCBI-GeneID:
120682209
NCBI-ProteinID:
XP_039819944
LinkDB
All DBs
Position
7N:complement(36694710..36698732)
Genome browser
AA seq
623 aa
AA seq
DB search
MDSLRRFLNPLVLNLQKMELELTCPVCMKLLSAPTMLPCHHTSCSNCAATRTSNGYSCAI
CKSAYRCQDLRPASHLEAIVGILRSLRSTVSTMILEQDAQLHIPVAKTASHGTPESGNKS
GVEKSDQMKSYNPVTSKLVYNQSTGPVFGNMEGVQTRDPAFENKAADAAVAPTVLVQKGH
SGSQSSDGPGDLDCDSNNLEGELITSRSPLQTALKREANVMDEHTRELKKQKSNDQVQRQ
TTMASAWKCEFCHSSQVTECTGPLSHYLHGEPLQADQAWKSNVQHVHEKCIEWAPQAFFT
GDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHRIKGCRWDEENFVM
LCSTHSSKRLPCERSKSKKKTQLQQPSSDIDDLNSPSPMQSNEFWTAPPVMTSEWVICGS
ALSGHEREILDKFEHRTGITVTNSWSSNVTHVIANTDERGACSRTLKVLMAILAGKWVLN
VNWLKACIEAREPVPEEPYEVRCDVHGSFDGPRTGRLRAIHQAPSLFAGLTFYFSGHFMP
AYKINLEDLIAAAGGSILEKSELSSTSLILYSVEPPQGNNLDTLNEIIKKREAEAEELAA
TVGCKVIPHTWLLDSIASCTILS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggatagcctcaggaggttcctgaacccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcatgaagttgctcagcgcgcctacaatgctaccgtgccac
cacacatcatgcagcaactgtgctgccacacggacttcgaatggttatagctgtgccatt
tgcaaatcggcatatcgttgtcaggatttaaggccagcttctcaccttgaggcgatagtg
ggcattctcaggagcctccgttctacagtcagcaccatgattctggaacaggatgctcaa
cttcacattcctgttgcaaagacagcatcccatggaacaccagaatcagggaataaaagt
ggggtagagaaatctgaccagatgaaatcttacaaccctgtcacttcaaagttagtatat
aaccaatcgactggacctgtgtttgggaacatggagggtgttcaaacaagagatcctgca
tttgagaacaaagctgctgatgcagctgttgcaccaacagtccttgtccaaaaggggcat
tctgggtcacaatcttctgatggccctggggatttggattgtgatagcaataatcttgaa
ggagaactgataacaagcaggtcacctcttcaaactgcactgaaaagagaggcaaatgta
atggatgaacataccagagaattgaagaagcaaaaatcaaacgatcaggttcaaagacaa
acaaccatggccagtgcttggaaatgtgaattttgccattcttcccaagtcactgagtgt
actggccctttgtcgcattatctacatggggagccattacaggctgaccaagcttggaaa
tcaaatgttcagcatgtccatgagaaatgcattgaatgggctcctcaagcattcttcact
ggtgatattgcaaacaacttggagcctgagttggcccgtgcttctaagattaagtgtagt
gtttgtggcttgaaaggtgcggcacttggctgccttgtgaagagctgccgcaagagcttt
catgtcccatgtgcccacaggatcaaaggctgcagatgggatgaagaaaactttgttatg
ctttgttctactcattcttcaaaaaggttaccttgtgaaagatcaaagtcaaaaaagaag
acccagctacagcaaccgtcatctgatattgatgatctgaattcaccttctccaatgcaa
agcaatgaattttggactgccccacctgttatgactagtgaatgggtgatatgtggatct
gccctcagtggccatgagagggaaatcttggacaaatttgagcatcgaactggcatcaca
gtaactaacagttggagctcaaatgtgactcatgtgattgctaatactgatgaacgtgga
gcttgttctaggacactcaaagttctcatggctattttagctgggaaatgggttctcaat
gtaaattggctgaaggcctgtattgaggctagagaaccagtcccagaagagccctatgag
gtcaggtgtgatgttcatggctcttttgatggcccccgcacaggaaggcttcgagcgata
caccaggcaccaagtctgtttgctgggttgaccttctatttcagtggccatttcatgcca
gcatacaagattaaccttgaagatttgattgcggcagcaggggggtcgattttggagaag
agcgagctttctagtacatcattgattctctacagcgtagagccaccacaagggaacaat
ctagacacccttaatgagatcatcaaaaagagagaagctgaggctgaagaattggcagcc
acagttggctgcaaagttattcctcatacatggcttctggattctattgcatcctgcaca
atccttagttga
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