Panicum virgatum (switchgrass): 120703816
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Entry
120703816 CDS
T07260
Name
(RefSeq) histone deacetylase 15-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120703816
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120703816
04131 Membrane trafficking [BR:
pvir04131
]
120703816
03036 Chromosome and associated proteins [BR:
pvir03036
]
120703816
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120703816
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120703816
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120703816
Membrane trafficking [BR:
pvir04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120703816
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120703816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
120703816
NCBI-ProteinID:
XP_039843929
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All DBs
Position
1K:complement(34117157..34126374)
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AA seq
596 aa
AA seq
DB search
MASDMQPLSGHEIPTRAVENCGVSDHTCHGKCQSCDSDVKPSCAEVNGISLSFGSHTDGK
ASKETCDCADPDGCLIATNGSCMAIDELTQEFEREQAGATLEDLIFSNDEEEDDSDWDPA
SSLVMNRWFCLNCTLPNVDAVMYCLNCHELKGSGVDGYDAFKTQIAEAALVSPDTELSEV
STAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLSAAGIFPSKCALVPPREITKEEL
LMVHTSDHIESVEQTKNMLYSYFTSDTYANGHSACAAKLAAGLCADLASLIVSGRVQNGF
AMVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKKVLIVDWDVHHGNGTQEIFEGDK
SVLYVSLHRHEYGNFYPGTGAAHEVGILDGQGFSVNIPWSRGGVGDNDYIFAFKTVVLPI
AAEFAPDITIISAGFDAARGDPLGCCDVTPMGYSIMTSLLTACSGGRLLVILEGGYNLRS
ISSSATEVVKVLVGDGSSFDVATAPSKEGLETVLQVLKIQQQFWPILGPTYASLQAHQGS
FFSKSTSKKRKHSGVPGPFWWNFGSKRLLYKALYEGPLLRKIKGFGQGKAIDSAEP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgatatgcaaccacttagtggccatgagatacccacccgtgctgtggagaac
tgtggagtttctgatcatacatgtcatggcaaatgccaaagctgtgatagcgatgtaaaa
ccatcttgtgctgaagtgaatggaatttccttgtcgtttggtagtcatactgatgggaag
gcttcaaaagagacctgtgattgcgctgatcctgatggctgtttgattgccacaaatgga
agttgcatggctattgatgagctaacacaggagtttgagagagaacaagctggggctaca
ctagaggatctgattttctctaacgatgaagaggaagatgacagtgactgggaccctgct
agtagccttgttatgaataggtggttttgcttgaattgcacattgccaaatgtggacgcg
gttatgtattgcctgaattgccatgagcttaagggatcaggtgtagatggatatgatgct
ttcaaaactcaaattgcagaggcagctttggtatctcctgacacagaattgtcggaggtg
tctacagcgattggttttgatgaaagaatgctgctccacagtgagctagaagttaaacca
aatccacatccagaaagaccggaccgccttcgtgcaattgctgccagtctttctgctgca
ggaatctttccctcaaaatgtgctttggtaccccctcgggaaattaccaaggaggaactt
ctaatggttcatacttcagaccacattgaaagtgttgagcagacaaagaacatgctttac
agttacttcacttcggatacttatgcaaatggacactcagcatgtgccgccaaacttgca
gcaggactctgtgctgatcttgctagtttgatagtatctgggcgtgttcaaaatggcttt
gcaatggtgagacctcctggacatcatgcaggggtgaagcaagcaatgggtttttgtctt
cacaacaatgcagcagtggctgcgttagctgcaaaaagagcaggtgccaagaaagtcctc
atagttgactgggatgtgcaccatggaaatggcacacaagagatattcgaaggggacaaa
tctgtcttgtacgtatcattacatcgtcatgagtatggaaacttctaccctggaactgga
gcagcacatgaggttggaattcttgatggtcaaggtttctcagttaatataccttggagc
cgtggcggtgttggagacaatgactacatctttgcttttaagactgtggtgcttccaata
gctgcagaatttgccccagacatcacaataatatcggcaggattcgatgcagctagaggt
gaccctctgggttgttgtgatgttactccgatgggatactctataatgacatccttgtta
actgcttgctcagggggaagattgttggtgatacttgagggaggatacaatcttcggtct
atatcctcatcagctactgaagttgttaaggtcttagttggggacggttcaagttttgat
gttgcaactgcaccatcaaaagagggcttggagactgttttacaagtactgaagattcag
caacaattttggccaattttaggtccaacctatgcatcgctgcaggcacatcaggggtcg
tttttttccaaatctactagcaagaaaaggaagcattcaggagtgccagggcccttctgg
tggaactttggaagcaaaaggctactgtacaaagcactctatgagggcccccttctgagg
aagatcaaggggtttggacaaggaaaagcaattgattcggcagagccttag
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