Phaseolus vulgaris (common bean): PHAVU_001G163300g
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Entry
PHAVU_001G163300g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PHAVU_001G163300g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
PHAVU_001G163300g
04121 Ubiquitin system [BR:
pvu04121
]
PHAVU_001G163300g
03036 Chromosome and associated proteins [BR:
pvu03036
]
PHAVU_001G163300g
03400 DNA repair and recombination proteins [BR:
pvu03400
]
PHAVU_001G163300g
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
PHAVU_001G163300g
Ubiquitin system [BR:
pvu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
PHAVU_001G163300g
Chromosome and associated proteins [BR:
pvu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
PHAVU_001G163300g
DNA repair and recombination proteins [BR:
pvu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
PHAVU_001G163300g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_UBOX
zf-RING_6
RTT107_BRCT_5
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
PTCB-BRCT
zf-RING_2
zf-Nse
Motif
Other DBs
NCBI-GeneID:
18641600
NCBI-ProteinID:
XP_007162579
UniProt:
V7CYV4
LinkDB
All DBs
Position
1:42439246..42444389
Genome browser
AA seq
623 aa
AA seq
DB search
MDDSAKPNAGKTKLLNPWMLHFQKLALELKCPLCLGLFKRPVLLPCNHLFCDSCLADCIT
AGAGSECAVCDAKYAQTDVRHVTFVENVVAIYRSLEATFCASLFQQRSSGDERVLEPCQA
VLNSTSSSIKAGKLPRNLPNVNKVGVVKNLKSKIAVHDRAEELELSHGRGKPNLMLSSHM
EMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPPDRLGNSSLKRASTGNVKLNEK
MGQLRSESSASETEGLERDTKRQKIIVHKSGKDPGAQLAIDAPNDFSPTGSICSFCQSSK
TSEVTGPMLHYANGNLVSGVAAMKPNVIPVHRSCIDWAPQVYFAGEVVKNLKAELARGAK
LKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHEDFLLLCPLHSNVKFPCEKSR
SKKQAARKHPNLSHLSSHNSNTHEASQDDCKNMVFCGSALSNEEKVLLIDYASTIGATVT
KFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEQPYEIG
VDNQGCQGGPRAGRLRALANEPKLFSSLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKE
ELEAERQECKVNSSKLLVVYNLD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggatgattccgcaaaacctaacgccggtaaaaccaagcttctcaatccatggatgctt
cacttccagaagctcgctctcgaactcaagtgccctctctgtctgggcttgttcaagagg
ccggtgttactgccttgcaaccacctgttctgcgattcatgcttagctgattgcataacg
gctggggctggttctgaatgtgctgtttgtgatgcaaagtatgctcaaacagatgtaagg
cacgtgacttttgtggagaatgtggtagcaatatatagaagcttggaggctaccttttgt
gctagtttgtttcagcaacgttcgtctggtgatgagagggttttggagccatgccaagca
gttcttaattcaacttctagtagtataaaagctggcaagcttcctcggaatttgcctaat
gtgaacaaggttggggttgtcaagaatctcaaatccaagattgcagtgcatgatagagct
gaagagcttgagttgtctcatgggagagggaagcctaatctgatgctatcttcccatatg
gaaatggatgtgaatcaagtgacacagtcagccccagacagccctcctttttgtgatacc
aaaggttcagataatgactgcagtgatcaagacagtgaacatccattacctcctcctgat
agactgggtaattcttccttaaagagagctagtacaggaaatgtaaaattgaacgagaaa
atgggacaattaaggtcagaaagttcagcctctgaaactgagggtcttgaaagggatacc
aagagacagaaaattattgtccataaatctggaaaggaccccggtgcacaattggcaata
gatgctccaaatgacttttctccaactggaagtatctgttcattttgccaatcttctaaa
acctccgaggttactggaccaatgctgcattatgctaatggaaacttagttagtggagtt
gcagcaatgaagccaaatgttattcctgtgcacagaagttgtattgactgggcaccacaa
gtgtactttgctggtgaagtggttaagaatctgaaggcagaattggccaggggagcaaaa
cttaaatgcagtaaatgtaatctaaagggagcagctcttggttgctatgtcaaatcatgc
cgaagaacttatcatgttccttgtgctatggacatctcaacttgtcgttgggatcatgag
gactttcttttgctctgtcccctccattcaaatgtaaaatttccatgtgagaaatctagg
tctaagaaacaggcagctcggaagcatcccaatttgtctcacctgtcatctcacaactca
aatactcatgaagcttcacaggatgattgtaaaaatatggttttctgtggatctgcttta
tcaaatgaagaaaaggtacttttgatagattatgcaagcacgattggtgcaactgtgacg
aaattctggacctcaaatgttacacatgtaattgcgtcaactgatgcaaatggagcatgc
tcaaggacattgaaagttctcatggccattctaaatggacgatgggttctaaaattggat
tggataaaagcatgcatggaagagaaaaatcctgtagaagaacaaccatatgaaattggt
gttgacaaccaagggtgtcaaggtggcccaagagctggcagacttagggcattggccaat
gagccaaagctattcagtagcttaaaattttatttttctggggattatgtgtcaacttat
aaggaagatcttgaagaattgattgaagtgggtggaggcactgttttgagaagcaaggaa
gaattggaagccgaaagacaggaatgcaaagtgaattcttcgaagttgctggttgtttac
aaccttgat
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