Pistacia vera (pistachio): 116137643
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Entry
116137643 CDS
T07386
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116137643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116137643
04121 Ubiquitin system [BR:
pvy04121
]
116137643
03036 Chromosome and associated proteins [BR:
pvy03036
]
116137643
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116137643
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116137643
Ubiquitin system [BR:
pvy04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
116137643
Chromosome and associated proteins [BR:
pvy03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116137643
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116137643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
zf-HC5HC2H
BRCT_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
zf-HC5HC2H_2
zf-RING_5
zf-RING_10
zf-rbx1
zf-Nse
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
116137643
NCBI-ProteinID:
XP_031279183
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MEDPRTQLEKMGRELKCPICLSLLNSSVSLTCNHVFCNSCIMKSMKSDSNCPVCKVPYSR
REVRAAPHMDNLVGIYKSMEIASGVSIFVTQNELSIKSSDKEKGVEGDRICSELAASMIC
QDRADNQETSKRKGLRRKTKTNLDHSGLGTVKPSFPTKKRVQVAKYPLPETPKQPAKFEN
ELVNNSSIQLKDSSVDLKEKSFLNEKGPVLQPFFWLREEEDEEKSTQNTDGDAYLTPPEI
PSFSDIMDSYDQSSQLSPTAETHHRTGDLDYFDSEMFEWTQRPCSPELLPSPVKTQVVHA
DENDHIKEKKIGTASHVGNTNEQQSIENAKVNSEKEDGIIDEGFPKSSPRSIDINNQIGN
GKLGKRGMKAKNIARAKRSKRDKVQGSEIQADLREESVNVAHQINDCTGSSSVLKARKRR
EKLGLGNCATVPEDQDVLVPVRAENPNQGRKNRVSDLPASFDKKQGSDEEFNLEKTRTTS
RKINGRNCLRSKRQNMGPAEVSVLKKVSAVQSQTNEDTVLKSSFKSFCLVDGKEASDPKE
KASKKARKLNSALNSKCSTETKCKKRMKVSFTAILKDGLVDSNQEGHSNDSAKGVPSTEI
VKGESDFRVLDESSRMKKVLDKNGMALRKCETLTSKTQCCFCHSLQDTEATGEMVHYYDG
RPVAADYNGGSEVIHSHRNCTEWAPNVYFEDDTAINLEAELARSRRIKCCCCGLKGAALG
CYEKSCRKSFHVPCAKLISQCRWDTDNFVMLCPLHASYKLPNENSGPQESRKKCISKRQL
HSQCNQVAIKNDTNTSYNWKSSQNKLVLCCSALTVGEREIVSEFERLSKVTVLKSWDSSV
THVIASTDENGAGRRTLKLLMGILEGKWILNIEWVKACMKAMKPVDEGQYEIAIDTHGIR
GGPRSGRQRVKNKLPKLFDGLKFYLMGGFVSSYKGYLQDLIIAAGGTILHRKPISRDQEL
LFDSSPSTTTFIIYSLELPDKCDLSKKTMILNGRQSEADVLANSTGAKAVSNSWVLNSIA
ACKFQSYEQ
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggaggatccaagaactcagctagagaaaatgggcagagaacttaagtgtcctatttgc
ttgagtttgctgaattcttcggtgtcacttacatgcaatcatgtattctgcaattcgtgc
attatgaaatcaatgaagtccgattccaattgtccggtttgtaaagtgccctatagccgt
agagaggttcgtgctgctcctcacatggataacttggtgggcatctataaaagcatggaa
attgcttctggagtcagtatatttgtcacacagaatgaactatcaattaagtcatcagat
aaagaaaagggagttgaaggtgatcgcatatgcagtgaactagctgcaagtatgatttgt
caggacagagcagataatcaagaaacatccaaaagaaaagggttaaggagaaaaactaaa
acgaatttggatcattctggccttggtactgtgaaaccatccttcccaaccaagaaaagg
gttcaggtcgccaagtatcctcttccagaaaccccaaaacagcctgcaaagttcgaaaat
gaactggttaataacagcagcattcagttgaaggacagctctgttgatttaaaggaaaaa
tcttttttaaatgaaaaaggaccagtgcttcaacctttcttttggttgagagaggaagag
gacgaggaaaagtcaactcagaacacggacggggatgcatatttaacaccaccagagatt
ccttcttttagtgatataatggattcatatgatcaaagttctcaattgtctccaacagca
gaaacgcatcatagaactggtgatttggattactttgatagtgagatgtttgaatggacg
caaagaccttgctccccagaacttcttccaagtcctgttaagacacaggtggtacatgct
gatgaaaatgatcatattaaagagaagaaaataggaacagcttcacatgttggaaataca
aatgaacaacaatccattgaaaatgctaaagtgaactcagaaaaagaagatggaattata
gatgagggtttccccaaatcctctcctagaagcatcgatatcaacaatcagattggaaat
ggtaaattgggtaagagaggcatgaaggctaagaatattgccagagctaagcgttcaaag
agagataaagttcaaggttccgaaattcaagctgatttaagggaggaatctgtaaatgtt
gcacaccaaataaatgactgcactggcagttcctcagttttgaaggctaggaaaaggaga
gagaagcttggcttgggtaactgtgcaactgtgcccgaagatcaagatgtacttgttcct
gtcagggctgaaaatccaaaccagggtcggaaaaacagggtgtctgatttgcctgcttca
tttgataagaagcaaggcagtgacgaagaatttaacttggagaagactagaacaaccagc
cggaagatcaatggccgaaactgtttgaggtcaaagcggcaaaatatgggtcctgctgaa
gtcagcgtgcttaaaaaagtttctgcagttcaaagccaaactaatgaagacacagttctt
aaatcatcatttaaatctttctgtctggtagatggtaaagaagcctctgatcccaaggaa
aaagctagcaaaaaagctagaaaactaaattctgctttgaattcaaaatgcagtacagaa
acaaagtgtaagaaaaggatgaaagtttcttttactgctatcttgaaagatgggttggtt
gacagcaatcaagagggccacagcaatgattctgcaaagggagttccatcaacggaaatt
gttaaaggcgaatctgattttagagttttagatgaatcatcaagaatgaaaaaggttctt
gataaaaatggaatggctttacgtaaatgtgaaacccttactagcaaaactcaatgttgt
ttctgtcattcattgcaagacacagaggctacaggagagatggtccactactatgatggc
aggcctgttgctgcagactacaatggtggatccgaggtcatacattcacacagaaactgc
acagaatgggcccctaatgtttacttcgaagatgacactgctattaatcttgaagctgaa
ttagctagaagccgtagaataaaatgttgctgctgtggactcaaaggtgcagcgcttggg
tgttatgagaagagttgtcgcaagagttttcatgttccttgtgcaaagcttatatcacaa
tgtcgatgggatactgacaactttgtcatgttatgccctcttcatgcctcttataagctg
cctaatgagaattctggacctcaggaaagcaggaagaagtgcatttcaaaaagacaattg
cactcacaatgcaatcaagttgctattaaaaatgatactaatacaagttacaactggaaa
tcttcacaaaacaagttggtgctttgttgttcagcccttacagtaggagagagggaaatt
gtttctgagtttgagagattatctaaagtaacagtgttgaagtcatgggattcaagtgtc
acccatgtcattgcatcaactgatgaaaatggagcaggcagaagaaccctaaaactttta
atgggtatcttggaggggaaatggatactgaatattgagtgggtgaaggcctgcatgaaa
gccatgaaacctgttgatgaggggcaatatgaaattgctattgacacgcatggaatcagg
ggtggtcctcgatcaggaagacagagagtcaagaataagctaccaaagctttttgatgga
ttgaagttctatctcatgggagggtttgtgtcttcctacaagggatatctgcaagacctc
ataattgctgctggaggaactattctacatcggaaacctatttcaagagatcaggaactc
ttgtttgattcatctccatctactacaaccttcataatttacagccttgagctgcccgat
aaatgtgatctcagcaagaagactatgattttgaatggcaggcaatcagaagcagatgtt
ttagcaaattcaactggagcaaaagcagtaagcaactcttgggttttgaattctattgca
gcctgcaaatttcaaagttatgaacagtaa
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