Rhinichthys klamathensis goyatoka (western speckled dace): 130099535
Help
Entry
130099535 CDS
T09701
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rkg01009
]
130099535 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130099535 (hdac6)
04131 Membrane trafficking [BR:
rkg04131
]
130099535 (hdac6)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130099535 (hdac6)
Enzymes [BR:
rkg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130099535 (hdac6)
Protein phosphatases and associated proteins [BR:
rkg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130099535 (hdac6)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130099535 (hdac6)
Membrane trafficking [BR:
rkg04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130099535 (hdac6)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
130099535 (hdac6)
BRITE hierarchy
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
130099535
NCBI-ProteinID:
XP_056121224
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MDPVPDSKGSSRSPRETPETKRENNNPNHKKSLQEARRKGRMDRSKVEEEMSNDLQNLDV
CGKTKPSGTGLVYIDAFTHFHCLWDASHPECPARVSTVMETLETEGVLGRCVRVEARAVT
EDELLLVHTKDYVELMKSTQKMTEEELKTLSDKYDSVYLHPEFFTSACLAVGSVLQLVDK
VMTSQLRNGFSINRPPGHHAQADKMNGYCMFNNLAIAARYAQKQHGVERVLIVDWDVHHG
QGIQYIFEEHPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMEDG
DYITAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMQVSPQCFSILTHMLKAVAQGR
LVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGASSESALNSISKTISALYPFWKS
LQTFEGGPLSDVPPLPAPVCAEVKVSSLITGLVYDQRMMLHHNMWDGHHPELPQRISRIF
SRHEELGLLSRCHRIPARLATEEELALCHSSDHISTIKSTEHMKPRDLHRLGNDYNSIYI
NNESYTCALMAVGSCFNSVQAILTGQVRNSVAIVRPPGHHAEKDTACGFCFFNTAALAAR
YAQSITHKSLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPNSEDANYNKV
GRGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGG
YQVTPEGYAHFTHQLMGLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPLLDHLPP
PKTSAAATINNVLRAHAPFWSSLRIQIPESLRLSLPSPKPKGKRGSAAKGKKTPRQSTPA
QSPGQKPHNLEQSGLDELTEDLLSLNLNTSTSSNTSPASVAIGGARRKVKPNPQRNSAGQ
ESPLKPSSERAGDGDSTHAEITAVKAETPDQSIRVSVVTGNPAGMYDQESCGLDAACGNA
VKTVIEVFGQQPTDVDGMYVVNPLPWCPHLESVRPVPAGGIDVFLPCEECGGDAENWICL
FCYKVLCGRYVNQHMVTHGQVSGHPLVLSFADLSVWCYACESYIHNKVFHEAKNTAHLVK
FGEEISPFS
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgttccagattccaaaggttcttctcgctctccaagagaaacaccagaaacc
aaaagagaaaacaacaacccgaaccataagaagagtctacaggaggcacggaggaagggt
agaatggaccggagcaaagtggaggaggagatgagcaatgatctacaaaacctggatgtg
tgtgggaagactaaaccatcaggaacaggtcttgtctatatagatgccttcactcacttt
cactgcctctgggatgccagtcacccagagtgtccagcgagagtgagcacagtaatggag
acactggagacggagggggtgctgggacgctgtgtacgagtagaggccagagctgtaaca
gaagatgagctattactcgttcatacaaaggattatgtagagctgatgaaatccacacag
aaaatgacagaggaggagctgaagactctctctgataaatacgactctgtctacctgcat
cctgaatttttcacctctgcctgtctggcggtgggatcagttctccagctggtggataaa
gtgatgacatcacagctgcgtaacggcttctccatcaacaggcctccgggtcaccacgct
caggcagataagatgaacggctactgtatgtttaataatctggccatagcggcgcggtac
gctcaaaaacagcatggagttgaacgagttctaattgtggattgggacgtgcatcatgga
cagggaatccagtatatttttgaagagcatcccagtgtgctgtatttctcagtgcacaga
tatgaagatggctcgttctggccgcatctcaaggagtctgacagcagctcggtgggttca
ggagcaggacagggctacaatatcaacctgccctggaacaaggtagggatggaggatgga
gattacatcacagctttccagcagctcctcctgcctgtggcatatgagtttcagcctcaa
ctggtgttagtggcggccggctttgactctgtgattggtgatccaaagggtgagatgcaa
gtgagtccacaatgtttctccatcctgacccatatgctgaaagctgtagcacagggccga
ctcgtgctggctctggagggtgggtataacctccagtccacagcagagggtgtttgcgct
agtgtgaggtcactgctgggggacccttgccctcacctgacctctcctggtgcttcgagt
gagagtgccctgaactccatctcaaagaccatctctgccttgtatccattttggaaaagt
cttcagacttttgaggggggtcctctgtccgatgtccctcccctgcccgctccagtatgt
gcagaagtgaaggtttcctctctgatcactgggctagtttatgaccagagaatgatgctt
catcacaacatgtgggatggtcatcatccagagctcccacagagaatctcacggatcttt
tcccgacacgaggagttgggcctgttgtcccgttgccatcggataccagctcgcttggca
acagaagaagagctggcgctctgtcacagttctgatcacataagcactattaagagtacg
gagcacatgaaacccagagatctgcaccgactggggaacgattacaactccatctacatc
aataatgagagctacacctgtgccctgatggccgtcggctcgtgctttaactccgtacag
gccatactcacaggccaggtgagaaacagcgtggccatagtccgtcctccgggtcatcat
gcagagaaagacacagcttgtggtttctgtttctttaatacggccgctttggccgcacgc
tatgcccagagcatcacacacaaatccctgcgtgtcctcatcctcgattgggatgttcat
catggaaacggcacacagcacatctttgaggaggatgacagcgtcctgtacatttctctg
catcgttatgaagacgggacgtttttccccaactcggaggatgctaactataataaggtg
gggcgagggaaaggccgagggtacaatgtcaacatcccctggaatggaggaaagatggga
gacccagaatacatggcagctttccatcacttagttatgccaatagccagagagtttgcc
ccagagctggtgctggtgtctgctgggtttgatgcggcacggggtgatccgttaggaggg
tatcaggtgaccccagagggctatgcccacttcacccatcagttgatgggtctggcagca
ggaagagtgctagtcatactggagggaggatataacctcacctccatctctgagtccatg
tccatgtgcaccagtatgttgctgggagactcccctccacttctagaccatctgccccct
cccaagaccagcgctgctgccaccattaacaacgtcctgcgtgcccacgcccccttctgg
agctccctgagaatacagattccagagtcactccgtttgtctttgccgtctcctaaaccg
aaaggcaagcggggatcggcagccaagggcaagaaaacgcctcgccagtccacccctgct
cagagtcccggacagaaaccgcacaatcttgagcagtccggccttgacgagctcactgag
gatctgctttctctgaatctcaacacaagtacctcatcaaacaccagcccagcgtcagtt
gcaattggaggagccagacgtaaggtgaaacccaacccacagaggaattcggcaggccag
gagtcacccctgaaaccctcgtcagagagagccggagatggagacagcacacatgcagag
attacagctgtaaaagcagagacacctgaccagtcgatccgagtgtctgtggtcactgga
aatccagctggcatgtatgaccaggagagctgtggtctggatgctgcttgtggtaacgct
gtgaagacagtcatagaggtcttcggacaacaacccacggatgtggacggcatgtatgtg
gtgaacccgttgccatggtgcccacacttggagtcagtgcgaccggtgcccgcaggtggc
attgatgtcttcctgccgtgtgaagagtgtggaggtgatgctgaaaactggatctgcctc
ttctgctacaaggtgctctgcgggcgttatgtgaaccagcacatggtgacccacgggcag
gtgtcgggtcaccctctggtgctgagcttcgctgatctttctgtctggtgttacgcttgc
gagtcatacatccacaacaaggtgttccatgaagccaaaaacactgctcacctcgtcaag
tttggagaggagatttctcctttcagctaa
DBGET
integrated database retrieval system
