Ruditapes philippinarum (Manila clam): 132751671
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Entry
132751671 CDS
T09557
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132751671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132751671
04121 Ubiquitin system [BR:
rphi04121
]
132751671
03036 Chromosome and associated proteins [BR:
rphi03036
]
132751671
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132751671
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
132751671
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
132751671
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
132751671
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
132751671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_5
Ank_3
zf-RING_6
BRCT
zf-RING_5
BRCT_2
zf-C3HC4_2
zf-C3HC4
Prok-RING_4
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
132751671
NCBI-ProteinID:
XP_060597870
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MFTIMNSTPVVFANTRNALILLGEKFKCQKCGLFASSPVTLGGCEHIFCNVCCEEYLGSA
CPVCSLPADVKDADVDRQLFNLASLCTRLKQELAVDEKALDNFKENEDPQIQSTPNQPIR
GASMYETTTPSNDHVTNATRKSEANQKTENNEVTSLALDSKTSRRKRKTKVNGNTKTSTE
CLQQETKPSVKKSKQKSVSSDASENENVPSKRRKSVPIDQTTMTQFYDYDEDSDNVNEEI
KIKENGSKGLRTLKTNKKPVTLPKTRLRHSLDSNIGKDLKSDTKSPSTKSKSVQRKKGKK
TDKNESILDVSLSDTGSIGQRTPVSERSKFTRISTEASGSPKLKASTPKGRRNLKPQTAQ
SPALNKRNAKGETPLQVAAIKNDKDKVKQLLGDGANPNVRDNAGWTPLHEACNHGYVEIA
KLLLDHGAMINIPGLENDTPLHDAINNGRVDCVKLLVSRGASLILRNMHGQTPKDLAVTN
AMKKALDTPVISSNETITSQVVDVMEYQTPCLTGTGLSREEKVILQKAASQLQVKLIDEV
TPEVTHIVTMFNNEGMCPRTIKIVQGILLGKWILNMEWLETCTQVGSLVCEEAFEAQGTS
LFPHAHAPYKGRMNRKQQLPGLFDGCHFYFHGSFEYANPTKEDFMNMVTIGGGKLLTREP
KPGHLDITLTVPYHADAVSELATCCVYLVHEPNVNYPPIRTKHMCSVPTSWIMDCVANFS
LMELPTVT
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaattatgaattcaacaccagtggtatttgctaacacaaggaacgcactgata
ttgttaggagaaaaatttaagtgccaaaaatgtgggctttttgctagcagtccagttact
cttggtggctgtgaacatattttctgcaatgtatgttgtgaagagtatcttggatcagcc
tgccctgtgtgcagtttaccagctgatgttaaagatgctgatgttgacagacagctattt
aacctggcatcactatgtactagactcaaacaggaactcgctgtagatgaaaaagcatta
gataatttcaaagaaaatgaagaccctcaaatacagagtactccaaatcagccaatacgt
ggtgcatcaatgtatgaaacaaccacgccaagcaatgaccatgtgacgaatgctacaaga
aaatccgaagcaaatcagaaaacagaaaataatgaagttacctcccttgcactagatagt
aaaacaagcagacgaaaaaggaaaacaaaggtcaatggaaataccaaaactagcacagag
tgcttgcaacaggaaacaaaaccttctgtgaaaaaaagtaagcaaaaatctgtgtcgtca
gatgcttcggaaaatgagaatgttcccagtaagagaagaaagagtgtaccaatagatcag
actacaatgactcaattttatgattatgatgaagattctgacaatgttaatgaagagata
aagataaaagaaaatggaagcaaaggtttaagaacacttaaaaccaataaaaaacctgtt
acgttaccaaaaactcgactaagacatagtttagatagtaacattggtaaagatttaaaa
tcggatacaaagtctccatctacaaagagtaaatctgttcaaaggaagaaaggaaagaaa
actgataaaaatgagagtatattggatgtgtcactaagtgatacagggagcatcggtcaa
agaacacctgtgtctgagaggtcaaagttcacaagaatttctacagaggcaagtggcagc
ccaaagctcaaagcaagtacaccaaaaggaagaaggaatttaaaaccacaaacagcacag
tcacctgccttgaataagagaaatgccaaaggtgaaactcctttacaggttgctgctatc
aagaatgacaaagataaagtgaaacaacttcttggagatggtgccaatcctaatgtacga
gataatgctggctggacaccactacatgaagcatgtaatcatggttatgtagagatcgct
aagttactactggatcatggtgcaatgattaacatacctggactagagaatgacacaccc
cttcatgatgccattaataatggccgtgtagattgtgtgaaactgctggtctctcgaggt
gcatctctcattctgaggaacatgcatggacaaacacctaaagaccttgctgtaacaaat
gccatgaaaaaagcccttgacacaccagttatatcttccaatgagaccataactagccag
gtagtagatgtaatggagtatcagacaccatgtttgacggggacaggtctgtctagagag
gagaaagttattctacagaaggcagcgtctcagttacaagttaaactgatagatgaagtc
acaccagaagtaacccatattgtaacaatgtttaacaatgaaggaatgtgtcctagaact
attaagattgtacagggcattctccttggaaaatggatccttaatatggaatggctggag
acttgtacccaggttggaagtttggtatgtgaggaggcatttgaagcacagggaaccagt
ttatttccacatgctcatgctccatataaaggaagaatgaatagaaagcaacagctacca
gggctgtttgatggttgccacttttattttcatggaagttttgagtatgccaacccaaca
aaggaggattttatgaacatggtgacaattgggggaggtaaactgttgactcgagaacct
aaaccaggtcaccttgacattactctgacagtaccgtatcatgctgatgccgttagtgaa
cttgcgacatgctgtgtttatttagttcatgaacctaatgtaaactatccaccaatcaga
actaagcacatgtgttcagttccaacttcctggattatggactgtgttgccaattttagt
ttaatggaattaccaactgttacataa
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