Rana temporaria (common frog): 120914088
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Entry
120914088 CDS
T07929
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtem01009
]
120914088 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120914088 (HDAC6)
04131 Membrane trafficking [BR:
rtem04131
]
120914088 (HDAC6)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120914088 (HDAC6)
Enzymes [BR:
rtem01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120914088 (HDAC6)
Protein phosphatases and associated proteins [BR:
rtem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120914088 (HDAC6)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120914088 (HDAC6)
Membrane trafficking [BR:
rtem04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120914088 (HDAC6)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120914088 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
120914088
NCBI-ProteinID:
XP_040180493
LinkDB
All DBs
Position
9:132430093..132556479
Genome browser
AA seq
1474 aa
AA seq
DB search
MASPQERKSPGVQGKSPAITTTKKPGKKSTSPQCPPTLQEVKKRGQRMRKTPERDFCDQL
DGLHLDRDSPAVGTGLVYDDRMTLPYCLWDDKFPECPARILAIKEKLEQYGLVDRCVKVP
AREASDADLLLVHSSDFVELMKSTQEMTEEKLKELSDRYDSVFLHPASFATSCLAVGSVL
HLVDKVVKGKMRNGLAVVRPPGHHAHTGKMNGYCMFNHLAIAAKYAQHNLGVKRVLIVDW
DVHHGQGTQFIFEHDPSVLYFSIHRYENREFWPHLSESSSSAVGKERGERYNINVPWNKI
AMKDADYITAFLHLLLPVAYEFQPHLVLVAAGYDSVVGDPKGEMAATPACFAHLTHLLMS
LAEGRLILSLEGGYNLRSISEGVCASLKILLGDPCPSLPQAFAPCESALASISDTFCVLR
KYWRSLQEQDFTLTQTVKAQEISQTALEDTSGDTLTIVLDASMKEVMRELPQQRTGLVYD
ERMMEHYNMWDSGHPETPQRIARIYLRHKEMGLLDRCIRLCQRVATKEQLQMCHSLPYIE
KIEKCSRMKPRDLHRMGDEYNSIFINNKSYSSACLAAGSTFSVVEAVLTGKVQNGVCIVR
PPGHHAEPGAACGFCFFNNVALAARYAQSLKNPSEPRLRVMILDWDIHHGNGTQHIFQED
DSVLYVSIHRYDDGQFFPSSEDAAHDRVGVGRGEGFNVNIAWNGGKMGDAEYLLAFHRIV
MPIAYEFNPQLVLISAGFDAARGDPLGGCRVSPEGYAHMTHLLMGLAGGKVVIVLEGGYN
LTSISESMSMCTRTLLGDPPPHLTDLHPPRPSALRAISNVLSVQHKYWRSLRLQVEPPPP
SEVSKEVRWTPQKQQPNKVVPMVESSSSPQLTTISPEKNIVETQCTQEFDLTGSKADDDS
LNSMSEIVEVKCLLSVAFGNESNDRVSSTDSHSVTYTTEESMETPLSENVQILDSVGEPS
PHKSTEMAKHELKESSINKDEVSNCLLPNLVDVEKKEELVVEVEVPGQDSVHIGSNEGES
LGTVIEVQGLERTPDILMSDDRTESSVEELLRDLKLDDSKNTSTPSISDGDSEPAGGSGK
KIFPLVQQVADRSEETSSQDTHLEENRLSEAAGGCSASCHQLDVEPSLKNSGEIFTVTPL
SWCPHLESVCELPPCGLEVTQPCAACGTDKENWVCLTCYVVLCGRYVSQHMISHGVSSGH
NLVLSFSDLSVWCYGCDSYIHNEVLNPAKQSAYYSRGQNSVHIGSNKGESLGTVIEVQVL
ERTPDILMSDDRRESSVEELLRDLKLDDSKNTSTPSISDGDSEPAGGARKKIFPLVQQVA
DRSEETSSQDTHLEDNLLSEAAGGCSASCHQLDVNSSLEYSGEMFTVMPLSWCPHLESVC
ELPPCGLEVTQPCAACGTDMENWVCLTCYVVLCGRYVSQHMISHGVSSGHNLVLSFSDLS
VWCYGCESYIHNEILIPAKQSAYYSKFGEEMPGA
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaccccaggagcgaaagtccccaggggttcaaggcaagtcccctgccatcact
accacgaaaaagcctgggaagaaaagcacctcccctcaatgtcctccaacgctgcaggaa
gtgaagaagagaggccaacgtatgcgaaagacaccggaaagggacttttgtgaccaacta
gatgggctgcacctggacagagattcacctgcagtagggactggccttgtatacgatgac
cgaatgactctgccatactgtctttgggatgacaaattcccagagtgtccggcacgaatc
ttggcaattaaagagaagctggagcagtatggtctggtggatcgctgtgttaaagtacct
gctagagaagcatcggatgcagatctcctgcttgttcacagttcagactttgtagagtta
atgaagtccactcaggaaatgaccgaggaaaaactcaaagagctttcagatcgctatgac
tctgttttcctgcaccctgcttcattcgctacctcctgtctggctgtcggctctgtcttg
catttagtcgataaagttgtgaaggggaaaatgcgcaatgggttagcagtggtcaggcct
ccaggacaccacgcccacactggcaaaatgaacggatactgcatgtttaatcacctggcc
attgcggccaaatatgctcagcacaatctcggggtaaagcgggtgctgattgtagactgg
gacgtccatcatggtcaaggaacacagttcatatttgaacacgatcccagtgtgttgtat
ttttccattcaccgatatgagaacagagaattttggccccatctttctgagtcttccagc
agcgcggtggggaaggagcgaggggaacgctataatattaatgtgccctggaataagatt
gcaatgaaggatgcagattatatcacagcatttctccatctcctcctccctgttgcctat
gagtttcagccacaccttgtactggttgcagctggatatgactctgtggtgggagatcca
aagggagagatggctgccaccccagcatgctttgctcatctaacacacctgctcatgtct
ttggctgaaggaagactcattttgtctcttgagggagggtataatttgcgttcaatttca
gaaggggtctgtgcttccctgaagattctcctcggagacccttgtccaagtttgcctcag
gcctttgccccctgtgagagtgccctggcatcgatctctgataccttctgtgttctcagg
aagtattggcggagcctgcaggaacaagatttcaccttaactcagacagttaaagcacaa
gaaatcagtcagactgcattagaagatacgtcaggagatactctgacaatagtattggat
gcatccatgaaagaggtgatgagggagttgccacagcagcgcaccggcctggtgtatgat
gagcgcatgatggaacattacaacatgtgggacagtggccaccctgagactccacaaaga
attgcccgaatatacctgcgtcataaggagatggggctgttagatcgttgcattcgtctc
tgccaacgcgtagcaacaaaagagcagctacaaatgtgccacagtcttccctacattgaa
aagatagaaaagtgttcccgaatgaaacccagggacctgcatagaatgggggatgagtat
aactccattttcatcaacaacaagtcttacagcagtgcctgtctggctgccggctcgaca
ttcagtgtggtggaagctgttcttacagggaaggttcaaaatggagtctgtatcgttcgc
ccaccaggtcaccatgcagagccaggcgcagcctgtggtttctgcttcttcaacaatgtt
gcccttgctgcacggtatgcccagagcctgaagaacccatcagaaccacgattaagggta
atgattctggactgggacattcaccatggcaacggaacacaacacattttccaggaagat
gatagtgtactgtatgtgtccatccatcgatatgacgatggccagttcttcccatcttct
gaggatgctgcacatgaccgggttggtgtcggccgtggagaggggttcaatgtgaatatc
gcctggaatggtggcaagatgggtgatgcagagtacttactggcctttcataggattgtc
atgcccattgcttatgagtttaatccgcagctggttttaatatctgccggttttgatgct
gcgcgtggagacccacttggaggctgccgtgtctctccagaaggctatgcccacatgaca
cacctcctgatgggtctggcaggtggcaaggtggtgatcgttctggagggtggttataat
ctgacctccatctcagaatccatgtctatgtgtactcgcacacttctcggagatccccct
cctcacttgactgacttgcatcctccccgtccatcagcactgcgtgcaatctccaacgtc
ctcagtgtccaacacaaatactggcgcagccttagattacaagttgagccccctccaccc
tctgaggtatcaaaggaggtgcgttggacaccgcagaagcagcagccgaacaaagtcgtg
cctatggttgagtcttcatcctccccgcaactgacgaccatttcccctgaaaagaatatt
gtagaaacacagtgtacccaagaatttgatttgactggctccaaagctgatgatgatagt
ctgaactccatgtctgaaattgtggaggtgaaatgtctgctctctgtagccttcgggaat
gagtccaatgaccgtgtttccagcacagacagtcattctgtaacatatactacagaagaa
agtatggagacgccattgtcagagaacgttcagatcttggatagtgttggggaaccttca
cctcacaaaagtactgaaatggctaaacacgaactgaaagagagctcaataaataaggat
gaagtctccaattgtcttttacccaacttagttgacgttgagaagaaagaagagttggtg
gttgaggtggaggttcctggccaagattcagtgcacataggttctaatgaaggcgagtcg
ctgggaacagtcattgaagtccagggtttagaaagaacgccagatattttgatgtctgat
gaccggacagagagctctgtggaggaactccttagagacttgaagctggacgatagtaaa
aacacatcaacccccagcattagtgatggagacagtgaacctgctggtgggtctggaaag
aagatatttcctctagtgcagcaagtggctgatcgttcagaggaaacttcttctcaagat
actcacctggaagagaatcgactctctgaagctgctggtggttgctcagcctcatgtcac
cagctagatgtggagccttcactgaaaaactctggagagatatttacagtgacgccactg
tcctggtgtcctcatctggagtcagtgtgtgagctgcccccttgtgggctggaggtgaca
cagccgtgtgctgcttgtggtacagacaaagagaactgggtgtgcctgacatgttatgtg
gttctgtgtgggaggtatgtctctcagcacatgatatctcatggagtttcgtctggtcac
aatcttgtactcagcttctctgatttgtctgtctggtgttatggctgtgactcctatatc
cataatgaggtcttgaatccagcaaaacagtcagcctactacagtcgtgggcaaaattca
gtgcacataggttccaataaaggcgagtcgctgggaacagtcattgaagtccaggtttta
gaaagaacgccagatattttgatgtctgatgaccggagagaaagctctgtggaggaactc
cttagagacttgaagctggacgatagtaaaaacacatcaacccccagcattagtgatgga
gacagtgaacctgctggtggggctaggaagaagatatttcctctagtgcagcaagtggct
gatcgttccgaggaaacttcttctcaagatactcacctggaagacaatctactctccgaa
gctgctggtggttgctcagcctcatgtcaccagcttgacgtgaattcttcactggaatac
tctggggagatgtttacagtgatgccactgtcctggtgtcctcatctggagtcagtgtgt
gagctgcccccttgtgggctggaggtgacacagccatgtgctgcttgtggtacagacatg
gagaactgggtgtgcctgacatgttatgtggttctgtgtgggaggtatgtctctcagcac
atgatatctcatggagtttcgtctggtcacaatcttgtactcagcttctctgatttgtct
gtctggtgttatggctgtgaatcctatatccataatgagatcttgattccagcaaaacag
tcagcctactactccaaatttggcgaggaaatgcctggagcataa
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integrated database retrieval system
