Rhododendron vialii: 131313255
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Entry
131313255 CDS
T09330
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
rvl
Rhododendron vialii
Pathway
rvl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131313255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131313255
04121 Ubiquitin system [BR:
rvl04121
]
131313255
03036 Chromosome and associated proteins [BR:
rvl03036
]
131313255
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131313255
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
131313255
Ubiquitin system [BR:
rvl04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
131313255
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
131313255
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
131313255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_6
zf-C3HC4_4
zf-HC5HC2H_2
zf-RING_5
zf-RING_10
zf-rbx1
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
131313255
NCBI-ProteinID:
XP_058197448
LinkDB
All DBs
Position
13a:14532470..14541105
Genome browser
AA seq
967 aa
AA seq
DB search
MADSSHLEKMGRELKCPICLSLLNSAVSLTCNHVFCSLCIEKSMKSASSCPVCKVPYRRR
EVRPAPHMDNLVSIYKSMEVASGFNIFVTQTVPSTKLSDEENQSVGGVTSGRQENGRTCE
EAPGNQRGVKGKQSKKSLKISKENSNLDHVKPSFLTKKRVQVPQYPPSEAPVQPATFGGL
GEIAKAKLDKSLVIKEKSAVHGKGEAAFTPFFWLRDEEDVEKITQQTDEGGNMDTPPNAP
CFSDIKDSDDEIPSEVSPKGRTDITHNDADYFDSEMFEWTQRPCSPELCSSPMKRQVADS
DEFDEIQVKKCKLSAHCGTTNGKHIIENIEDVVPKQRADDVEVSLTAMSSPRKNNTDTND
ELRKSNKRGRKVSGRRIKKQAKRTMDEAPRVQVDPERLAECAIHEKILNENIKSLHLNKR
TCKGDKKVMFDSSAAESVPETVSSFSAEANPLNLDNNRVTDFQHSTDQKKSSMKSVVQQQ
IDIPKRTRNRTNSKCQEQRCSNKRKISTIDISKDNKLVKGVQDGCNEVSVKKTQPMGKLQ
STSEVRDLQVKKLEEVPPALNGVVLRKCETVTNKIQCAFCHSTEDTEASGIMVHYLNGKP
VAADYNGGSKVIHAHRNCTEWAPNVYFEDDNTINLEAELARSRRIKCCCCDIKGAALGCY
EKSCRKSFHFPCAKLIAQCRWDNDNFVMLCPLHASSALPNELCGSQIKRKQKCILKRPSK
SHQSEVAVIHASNTSQRWDSSGSFGKLVLCCSALTKEEKEIVSDFGRLSGATVLKNWGSS
VTHVIASTDENGACKRTLKILMGILEGKWILSTEWIKACMKTMEPVDEQLYEIAVDIHGI
RDGPRLGRLRHVNKQPKLFDGCKFYFTGEFIPSYKGYLHDLVVAAGGTVLQRKPISRDQE
SLSSENPRSSVYIIYSLELQGKCDPNKKNSIFNQRRKDAEALASSTGAIVASNSWVLNSI
AASNLLD
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcttctcacctcgagaaaatgggcagagaactcaagtgccccatctgcttg
agtctgctgaactccgcagtttcactcacatgcaaccatgtattttgcagtttatgcatt
gagaaatctatgaaatcagcttccagttgtccggtctgtaaggtcccataccgacgtaga
gaggttcgccctgctcctcatatggataacctggtgagcatttacaagagcatggaagtt
gcttcaggattcaatatatttgtcactcaaactgtaccgtccaccaaattatcagatgaa
gagaaccaatcagtggggggtgtgactagtggaagacaagagaatggtagaacatgcgaa
gaggcaccaggtaatcagagaggggtcaaaggaaagcagtccaaaaaatcgttaaagatc
tccaaagagaattcaaatctggatcatgtgaaaccatcctttctaacaaagaaaagagta
caggttccgcaatatcctccttcagaggctccagtacagcctgcaacgtttggtggacta
ggtgaaattgcaaaagctaaactagataaaagtttagtcataaaagaaaaatctgctgta
catggaaaaggagaagcagctttcactccatttttctggttgagagatgaagaggacgta
gagaagataactcagcagacggatgagggtggcaacatggatactccacctaatgctcct
tgctttagtgacataaaggactcagatgatgaaatcccctctgaagtgtccccaaaagga
agaacagatatcacacataatgatgcagattactttgatagcgagatgtttgaatggacc
caaagaccttgctctcctgagctctgctcaagtcccatgaaaagacaggttgctgatagt
gatgaatttgatgaaattcaggtaaagaaatgcaaattatctgcacattgtggaactaca
aatggaaaacacattattgaaaacatagaagatgtggttcccaaacagagggctgatgat
gtggaggtaagcttaactgctatgtcctctccaagaaaaaataataccgacactaatgac
gaattgagaaaatccaataaaagaggtaggaaggtgagtggaagaagaataaagaaacaa
gccaagagaactatggatgaagcacccagagttcaagttgatccagagagattggccgag
tgtgctattcatgagaagatactgaacgagaatatcaagtccctacatttgaacaaaaga
acttgtaagggggataagaaggttatgtttgatagcagtgctgcagaaagtgtaccagaa
accgtttcatccttctctgctgaagcgaatcccctgaatctcgataacaacagggtcacg
gactttcaacattcaacagatcagaaaaagagcagcatgaagagtgtcgttcagcaacag
atagatatccccaaaagaacaagaaataggaccaattctaaatgccaagagcagagatgt
tcaaacaagcgaaaaatctcaactattgatatctcaaaggataataagttggttaaaggt
gttcaggatggttgtaatgaggtttctgtcaagaagactcaacccatgggaaagttgcaa
tccacctctgaagtcagggatctccaggttaaaaagttggaggaggttcctccagctttg
aatggagtggtattgcgtaaatgtgagactgttactaataaaatccagtgtgcattctgc
cattctacagaagacactgaggcctcaggtatcatggttcactacctcaatggcaagcct
gttgcggctgattataacggtggatcaaaggtcatacatgcacataggaattgcactgaa
tgggctcctaatgtatactttgaagatgataataccatcaacctagaagctgaattagca
agaagtcgaaggattaaatgctgttgctgtgacatcaaaggagcggctcttggatgttat
gagaaaagctgtcgcaagagtttccattttccttgtgccaagttgattgcacaatgccgg
tgggataatgataactttgtcatgttatgccctcttcatgcatcctcagcacttcctaat
gagttatgtggatctcaaataaaaaggaaacagaaatgcattctgaaaaggccatctaaa
agccaccaatcagaagttgctgttatacatgccagtaataccagccagcgttgggattca
agtggatcatttggaaaacttgtcctctgttgttcagcactcacaaaagaagagaaggaa
attgtttctgattttgggaggttatctggagctacggtgttgaaaaactggggttccagt
gtcacccatgtcattgcatctacagatgagaatggagcatgcaaaagaaccctaaaaatt
ttgatgggaatcttagaggggaagtggatactgagtactgaatggattaaggcttgcatg
aagaccatggaacctgttgatgagcagctttatgaaattgctgttgacattcatggaatc
agggatggtcctcgacttgggagattgagacatgtaaacaagcaaccaaagctcttcgat
gggtgtaagttttatttcactggagaattcataccttcatacaaggggtatctacacgat
cttgtagttgcagccggagggactgttctgcaaaggaagcctatttcaagagaccaggaa
tccctgtcatctgaaaaccccagatcatcagtatatatcatttatagccttgagttacaa
ggtaagtgtgaccccaacaagaagaattcaatcttcaaccagaggcgaaaagatgcagaa
gctttagcaagttccaccggagccatagtggcaagcaattcatgggttttgaactccatt
gctgcctccaacttgcttgattag
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