Salvelinus sp. IW2-2015 (Arctic char): 111959807
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Entry
111959807 CDS
T05762
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111959807 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111959807 (bard1)
04121 Ubiquitin system [BR:
salp04121
]
111959807 (bard1)
03036 Chromosome and associated proteins [BR:
salp03036
]
111959807 (bard1)
03400 DNA repair and recombination proteins [BR:
salp03400
]
111959807 (bard1)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111959807 (bard1)
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
111959807 (bard1)
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111959807 (bard1)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111959807 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
111959807
NCBI-ProteinID:
XP_023837371
LinkDB
All DBs
Position
LG36:complement(30855140..30883833)
Genome browser
AA seq
821 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGVGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAAVPLPEVGSGTVKAAPRPPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRATNYEKKKATKKTRNGGGGVRKPAAGGGQKPTTHKETKQNIKTQRLEAIN
QQWGFGGAREGDVREEEEQVTAEEGEHRSSKRVSFQSPDTLPATVEPQKEDLPQGNTIIL
SPSRSILKVVQPGENVPLSENQDGPSTHTTPSQLDKISAKQHSKPNEEMTTKPDLPSPPK
RTPKIFFVEEKNISECTPQKPKASPGQGRRPAVDRVALPAMHTSPSPAASPRQGRSSTIT
KISREGAQQCGSSPCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKE
LLDQGADPNLKDNAGWTPLHEACNLGHQGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNG
HTGIAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQSILLAASEGPHPVNSPLSPPPSLNK
ASEVVRWEEQVVVLGSKLSQSQQTQLAKLRHLLGGKRADAFSCSVTHVVVPDGPMPTTLS
TLLGLLNGCWVLNFSWVEACLQADSWIAESDHEAGAGPQRSRINRHSLLPPLLDGCFFYL
MGSFRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASPGSDQALCTQYIIY
DPQGSYRPPRLRLGKVWSAPSTWVVNCISAFQLLPVPELES
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcaccgacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctc
ggagtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaagctggagtgggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctcagattactcc
gatgcccttcccattacaccaccagcacagtcagataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggcggtgcctctaccggaggttgggagtgggactgtgaaagctgctccaagacctccc
gagacactacctgagtccaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcctcctctcctcaaagggcgactaactatgaaaagaaaaaagcgact
aagaagacgagaaatggtggtggtggtgtcaggaagcctgcagctgggggtgggcagaaa
ccaaccacgcataaagaaaccaagcagaatatcaagacacagaggctggaggcaatcaac
cagcagtggggctttggcggagcgagagaaggagatgtcagagaggaagaagagcaggtc
actgcagaggaaggagagcacaggtctagtaaaagagtttccttccaaagcccagacacc
ctgcctgccactgtggagcctcagaaggaggatctccctcaggggaacaccataatcctc
agccccagcagaagcatcctgaaggtggttcagccaggagagaacgtcccgctctctgag
aaccaggacggtccaagcacacacaccaccccttctcagctggataagatatctgcaaag
cagcactccaaaccaaatgaagaaatgactacaaagcctgacctgccctcccctcctaag
cgcactcccaaaatattctttgtggaagagaaaaacatctcagagtgtaccccacagaaa
cccaaggcatctcctggccagggtagacgtccggcagtggacagggtcgcactcccagcc
atgcatacctcgccctcccccgctgccagccccagacagggtcgatcctccaccatcacc
aagatatccagagaaggagcgcagcagtgtggcagtagcccgtgttccccagcccccctg
gggaagagatccccgggcaggctgtcacagaacagcccagctgtggtgaagagaaaccac
aagggagagacacccctacacctggcagcaataaagggtgatgtggagacagtgaaggag
ctcctagaccaaggtgctgaccccaacctgaaagacaatgctggatggacaccgctgcac
gaggcatgtaacctgggtcaccagggtgtagtggaggtgttggtggagaggggaggcgtg
ctgttgaacacaccaggctacaagaacgattctcctctacacgacgctgtcaggaacgga
catactggcatcgccatgctactgctgcagcacggggcttcacagagcgtcttgaatatg
tttggccttcgccctgtggactatgccgtgagcccagagatgcagtcaatccttctggca
gcctctgaaggaccccacccagtcaactcacctctcagtcctccacccagcctcaataag
gccagtgaagttgtgagatgggaggaacaggtagttgtactgggcagtaaactgtcccag
tcccaacagacccagctggccaaactgagacatctcctgggaggaaagagagcagatgcc
ttctcttgctctgtcacccatgtggtggtaccagacgggccgatgcccaccacactgtcc
actctcctgggcctcctgaatggctgctgggtcctcaactttagctgggtagaggcgtgc
ctgcaggcagatagctggatcgccgagagtgaccatgaagcaggagcaggaccgcaacgc
agccgcattaacagacacagcctgctgcctccgctgttggacggttgtttcttctacctc
atgggctccttcaggaagccccccagggacgagctcctccagctggtgagagaggcaggg
ggccagattctgacccgacagcccaaaccagacagtgatgtgacacagaccctgtctgct
gcagcctaccacgcctctccgggctcagaccaggccctgtgtacccagtacatcatctat
gatccccagggctcttacaggccacccaggctgaggttaggaaaggtgtggtcagctcca
tctacatgggttgtaaactgtatatcggccttccagctactgccagttcctgagcttgaa
tcatag
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