Sorghum bicolor (sorghum): 110432512
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Entry
110432512 CDS
T01086
Name
(RefSeq) histone deacetylase 15-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sbi01009
]
110432512
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
110432512
04131 Membrane trafficking [BR:
sbi04131
]
110432512
03036 Chromosome and associated proteins [BR:
sbi03036
]
110432512
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
110432512
Protein phosphatases and associated proteins [BR:
sbi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110432512
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
110432512
Membrane trafficking [BR:
sbi04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110432512
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
110432512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
110432512
NCBI-ProteinID:
XP_021308749
LinkDB
All DBs
Position
2:complement(4103729..4115614)
Genome browser
AA seq
634 aa
AA seq
DB search
MASDMRAPSSGKKSETSHGMKCGVSDQACHGKCQSCDIAAKPICSGVDGVSSLTGSHTDV
KASKENCGACSLNNDRADSLEEEVKGSTARIGHVESADPDGCVDVKKESFMAVDDLPQEF
EGEQVGATLEDLFFFNGEEEDDSDWEPASRLVEDRWFCFNCTMPIVDQITHCMNCRELKE
SAVDGYDVFKKQIAQTALLSADTELLPVSTAIGFDERMLLHSEQLEVKPNPHPERPDRLR
AIAASLAAAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFTSDTYANG
HSACAAKLAAGLCADLASLMVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAA
KRAGAKKVLIVDWDVHHGNGTQEIFEGDKTVLYISLHRHEDGNFYPGTGAAHEVGVLDGQ
GFSVNIPWSRGGVGDNDYIFAFQTVVLPIAAEFAADITIISAGFDAARGDPLGGCDVTPV
GYSWMTSLLADCSNGRLLVILEGGYNLQSISSSATEVVKVLLGDGPNRASFVGSPSREAL
KTVSQVLKIQQRFWPVLGPTYASLQAQQGSVSSNHITKRNELKKRKHSGGLGPFWWKLGS
KRLLYEALFEHRRQRKIKGSGEGKATGFSSTLDG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgatatgagagcacctagcagtggcaaaaagagtgagacctcccatggcatg
aagtgtggggtctctgatcaagcttgtcatggcaaatgccaaagctgtgacattgctgca
aaacctatttgttctggagtggatggagtctcctcgttgactggtagtcatactgatgtg
aaggcctcaaaagagaactgtggagcatgcagtctgaacaatgatcgtgctgattcttta
gaagaagaggtaaagggttccacagcgaggataggtcatgttgagagtgctgatcctgat
ggctgtgtggatgtaaaaaaggaaagtttcatggctgttgatgatctaccacaggagttt
gagggggagcaagttggggcaacactggaggatctgtttttctttaatggtgaagaggaa
gatgacagtgattgggaacctgctagtcgccttgttgaggatagatggttttgctttaac
tgcacaatgccgattgtggaccagattacacattgcatgaattgccgtgagcttaaggaa
tctgcagtagatggatatgatgttttcaaaaaacaaattgcacagacagctttgttatct
gccgacacagagttgctgccagtatctacagcgattggttttgatgaaagaatgctgctc
cacagtgagcagctagaagttaaaccaaatccgcatccagaaagaccggatcgccttcgc
gccattgctgcaagtcttgctgctgcagggatctttccctcaaaatgtgctttggtacct
cctcgagaaatcacgaaggaggaactccttatggttcatagtccagaccacattgaaagt
gtcgagcagacaaagaacatgctttacagttacttcacttcggatacttatgcaaatgga
cattcagcatgtgctgccaaacttgcagctggattatgtgctgatcttgctagtttgatg
gtatctgggcgtgttcgtaatggttttgctctggtaagacctcctgggcatcatgcaggg
gtgaagcaagcaatgggtttttgtcttcacaacaatgcagcagtggctgctttagctgca
aaaagagcaggtgccaagaaagtcctcatagttgactgggatgtgcaccatggaaatggc
acacaagagatattcgaaggggataaaacagtcttgtacatatcattacatcgtcatgag
gatggaaacttttaccctggaactggagcagctcatgaggtgggagttctggatggtcaa
ggattctcagttaatataccttggagccgtggtggtgttggagacaatgactacatcttt
gcttttcagactgtggtgcttccaatagctgcagagtttgccgcagacatcactataata
tctgcaggattcgatgcagctagaggtgaccctctaggtggttgtgatgtcactccagtt
ggatactcttggatgacatccctgctagctgattgctcaaatggaagattgttggtgata
cttgagggaggatacaatctccagtcgatatcctcatcagctactgaagttgttaaggtc
ctacttggggatggtccaaatcgtgcttcatttgtaggttcaccatcaagagaggccttg
aagactgtttctcaagtcctgaagattcaacaacgattttggccagttttaggtccaaca
tatgcatcactacaggcacagcaggggtcggtttcttccaatcatatcaccaaacgtaat
gagctgaagaaaaggaagcattcaggaggattagggcccttctggtggaagttgggaagc
aaaaggcttctgtacgaagcgctttttgagcaccgtcgtcagaggaaaatcaaggggtcc
ggagaaggaaaagcaactggtttcagcagtaccttagatgggtag
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