Siniperca chuatsi (mandarin fish): 122883078
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Entry
122883078 CDS
T08948
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
schu01009
]
122883078 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122883078 (hdac6)
04131 Membrane trafficking [BR:
schu04131
]
122883078 (hdac6)
03036 Chromosome and associated proteins [BR:
schu03036
]
122883078 (hdac6)
Enzymes [BR:
schu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122883078 (hdac6)
Protein phosphatases and associated proteins [BR:
schu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122883078 (hdac6)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122883078 (hdac6)
Membrane trafficking [BR:
schu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122883078 (hdac6)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
122883078 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
122883078
NCBI-ProteinID:
XP_044067175
LinkDB
All DBs
Position
LG10:complement(30851713..30875535)
Genome browser
AA seq
1113 aa
AA seq
DB search
MQSGSDPPGSGPKSVRRSPRLSPQCGGGGRGGRGGRGGEEQRKGGSSLQEAKRRGRMERS
REEEEELHDRLQTLDLSSSSAASGTGLVYSEIFARHLNLWDSSHPESPDRVTSIMKELER
QELLSHCIRVEPREATEEELLLAHMKHYVDLMKSTQTMTESELHTLSEKYDSVYLHPESF
QVCVSAVGSVLQLVDRVMTSELRNGFAVIRPPGHHAQCNEANGFCIFNNVAIAARYARTR
HSVSRVLIVDWDVHHGQGIQYLFQEDPSVLYFSVHRYEQGSFWPHLPESDSQFVGSGPAE
GRNINLPWNKAGMTDADYIAAFQQLLLPVAHEFQPQLVLVSAGFDAAVGDQKGEMCVSPQ
CFHVLTHMLMSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGACPPLTPPTAPSDSAL
QSISQTVSALYPHWASLQILDGDPLAGRSVIRATTIKQSPAPSVATTTGLVYDERMMEHL
NMWDRHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHSVQHIKQMEATAV
MKPRDLHKLGNEFNSIFINNQSFQSALLAAGGCFNAVERILTGQVSNGVAIVRPPGHHAE
TDSPCGFCFFNTAALAARHAQTISRDEPLRVLILDWDVHHGNGTQHMFEEDDSVLYVSLH
RYDNGMFFPSSEDAAPDRVGVSKGAGFNVNVAWNGGRMGDSDYLAAFHHIVMPIATEFNP
GLVLVSAGFDAARGDPLGGYHVTPEGYAHLTHMLMSLAGGRVLLILEGGYNLSSISDSMA
MCTSVLLGDPPPSLVTPLPPPHHSAVATINTVIRHHAPYWRSLRIRIPESVRASLPSLKH
RGKRGSKGKGRKSEQNGTDKPPLPPTGLVDTTTESSLEQLTQGLASLDISQPSANHTPAT
STPVGGARPKVRLRLEKVTCEGEVKAESGEVKAESGEVTPEQSQSAESTQPQAVAVAVSE
SVAPGDEAAGGAGAEPEAEGACGWSKPQTSLELKCGGQTETLYVVDPLSWCPHLDAVKPL
PPSGIDVFLSCQDCGSDAENWTCLTCYQVFCGRYVNEHMVTHGVVSEHPMVLSFSDLSVW
CYLCEAYVHNQILFEAKNAAHWAKFGEEIPPWS
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctggatcagatcctccaggatctggaccgaagtctgtcagaagatctcctcgc
ctgtctccgcagtgcggcggcggtggacgaggaggacgaggaggacgaggaggagaggag
cagaggaaaggaggaagcagtctgcaggaggcgaagaggagaggaaggatggagaggagc
agagaggaagaggaggagctgcacgacagactgcagacgctggacctgtccagcagctca
gcagccagtggaacgggtctggtttactctgagatcttcgctcgtcatctgaacctgtgg
gacagcagtcatccagagagtccagacagagtgacgtccatcatgaaggagctggagaga
caagagctgctgtctcactgcatcagagtggagcccagagaagctacagaagaagagctg
ctgctcgctcacatgaaacattatgtggatttgatgaagtcgactcagacaatgacagag
agtgaactacacactctctctgagaaatacgactctgtttaccttcatcctgagtccttc
caggtgtgtgtgtcggcggtgggttcagtcctccagctggtcgatcgggtcatgacctct
gaactcaggaacggattcgctgtcatcagacctccaggtcatcacgctcagtgtaacgag
gcgaacggtttctgtattttcaacaacgtggcgatcgcagctcgatacgctcggacgaga
cactcagtcagcagggtgttgatagtggactgggatgttcatcatggtcagggcatccag
tacctgttccaggaagaccccagtgtcctgtacttcagcgtccacaggtacgagcagggg
tctttctggcctcacctcccagagtctgacagtcagtttgtgggcagcggaccagctgaa
ggccgaaacatcaacctgccctggaacaaggcggggatgacggacgccgattacatcgca
gcctttcaacaactgctgctgcctgtagcccacgagtttcagcctcagctggttctggtc
tctgctggatttgatgctgcagttggagatcaaaagggggagatgtgtgtgagtcctcag
tgtttccacgtcctgactcacatgttgatgagtttggcagaaggtcggctcgttctcgct
ctggagggaggttataacctgcagtcgacagcagagggcgctgcagcctgtgtcagagct
ctgctgggaggagcctgtcctcctctgactccgcccaccgctccatctgacagtgccctg
cagtcgatctctcagacggtctcagctctgtatccacactgggcgtctctgcagattctg
gacggcgacccgttggctgggagaagtgtcatcagagctacaaccattaagcagagcccc
gccccctctgttgccacgacaacaggtctggtttatgacgagaggatgatggagcacctg
aacatgtgggacaggcatcatcctgaacagcctcagagaatctttaaaatcttctccaaa
catcagcagctgggattggtcgatcgttgccaacggataccagctcgcttagcaacagag
gaggagctgtccaggtgtcacagcgtgcagcacattaagcagatggaagccacagcagtg
atgaagcccagagatctgcacaaactaggaaacgagttcaactccattttcatcaacaac
cagagcttccagtctgctctgctggctgctggaggctgcttcaacgctgtggagaggatc
ctcacaggacaggtgagtaatggcgtggcgatcgtccgtcctcctggtcatcacgctgag
acagattctccctgtggtttctgtttcttcaacacggcagcgctcgccgctcgccacgcc
cagacaatatcccgggatgaaccgctgcgagtcctcatcctggactgggacgttcaccac
ggcaacgggacacagcacatgttcgaggaggacgacagcgtcctgtacgtctccctccat
cgctatgacaacgggatgttcttcccgtcttcagaggacgccgcccctgacagggtgggc
gtgtccaagggggcggggtttaacgtcaacgtggcgtggaacggggggcggatgggcgac
tctgactacctcgctgcctttcaccacattgtcatgccgatcgccaccgagtttaatccc
ggtctggttctggtgtcggccggcttcgatgcggctcggggagatccgctgggtggatat
catgtgaccccagagggatacgcccacctcacacacatgctgatgtcactggccggaggg
cgggtcctactcatactggagggaggttataacttatcatccatctctgactccatggcg
atgtgcaccagcgtgttgctaggagaccctcctccctccttggtgacacccctcccccct
cctcatcacagtgccgtggcaacgatcaacacggtcatccgacaccacgccccctactgg
aggtcactgaggatacgcatcccagagtctgtccgggcgtctctgccctccctgaagcat
cgtgggaaacgtggttctaaaggaaaaggaaggaaatcagagcagaacggcacggacaaa
ccaccgctgccccctacaggactggttgacacaacgacggagagcagtctggagcagctc
actcagggattggccagtttggacatcagtcagccctcagccaatcacactcctgctacg
tccaccccggtgggcggggccaggccgaaggtccgcctcaggctggagaaggttacctgt
gaaggcgaagtgaaggcggagtcaggcgaagtgaaggcggagtcaggcgaagtgacacct
gagcagagccaatcagcagagagtacgcagcctcaggctgttgccgtggcagtgtcagag
tcggttgcccctggagacgaggctgctggtggagcgggggcggagccagaggcagaagga
gcgtgtggttggtcgaagcctcagacgtctctggagctgaagtgtggaggacagacggag
actctgtacgtggtggaccctctgtcctggtgtcctcacctggatgctgttaagcccctc
cccccctcaggtatagatgtcttcctgtcgtgtcaggactgcggctccgacgctgagaac
tggacctgtctcacctgctaccaggtgttctgtggtcgttacgttaacgagcacatggtg
actcacggcgttgtgtctgaacacccgatggttctgagcttctccgacctgtcggtgtgg
tgttacctgtgcgaggcctacgtccacaaccagattctgtttgaagctaaaaacgctgct
cactgggccaagtttggagaggagatccctccatggagctga
DBGET
integrated database retrieval system
