Suncus etruscus (white-toothed pygmy shrew): 126001107
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Entry
126001107 CDS
T09902
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126001107 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126001107 (BARD1)
04121 Ubiquitin system [BR:
setr04121
]
126001107 (BARD1)
03036 Chromosome and associated proteins [BR:
setr03036
]
126001107 (BARD1)
03400 DNA repair and recombination proteins [BR:
setr03400
]
126001107 (BARD1)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
126001107 (BARD1)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
126001107 (BARD1)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
126001107 (BARD1)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
126001107 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_2
Ank
Ank_4
Ank_5
Ank_3
BRCT_2
BRCT
zf-RING_5
zf-C3HC4_2
zf-C3HC4
zf-rbx1
RTT107_BRCT_5
zf-RING_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
126001107
NCBI-ProteinID:
XP_049624285
LinkDB
All DBs
Position
1:complement(30768735..30872612)
Genome browser
AA seq
881 aa
AA seq
DB search
MAPPCPCVPQTRNLASSCKNGINIISKTISECLNASTNLVYIYMTLTSSTYRPALLAPPP
ACGNRWGEGVASPACCIAAGAAEFRPRPLPTRSAPLPGVLPAKLATMPPKRLIKAHSGNR
PRLAPAAEPAGEAWSHSRAALERLEQLLRCSRCSHILKEPVCLGGCEHIFCSNCVSDYIG
SECPVCYTPAWIQDIKINRQLDNMIQLCSKLRNLIYGNKFSDLKEDTARKSLLTNSENKK
NSIKMWFSPRSKKVRYVMNTISVETRPKLVNDENNHQASLYDFVSATPPTVPEKPKKTCK
RSGKRKKKKTLTEINQQWNLVAERENGELASEEVVKDRQVSFCDQPSIIASPQKNGGIDV
TVNGSESASQFCVSLTAVSLPVIDLTESPKTEDRNEVVTPKENLCARDPTSKKSFTAALN
GKREPHNRLSMPISKRCRRTDPGPAGEPTVPTALSEDMPSLDSPLPPSSKPQVGALRRKS
NDVLDEPSRFSPSTPPSTLNSSHYRRMMLSPSAKKLTSSTGSLVALKRNHRGETPLHIAS
IKGDVPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS
PLHDAVKNRHIDIVKLLLSYGASTNAVNIFGLRPVDYADSENMKSLLQLREKSESSLTSH
STVVNTSQRRNHPLILIGSGLSSEQQNMLSELAVILKAKKCAEFDNTVTHVIVPGMTVQS
TLKCMLGILNGCWILNFEWVKACLQSKEWEQEEKYEIPEGPQRSRLNREQLLPKLFDGCY
FYLGGVYKHHPKDHLIKLINAGGGQILSRKPKPDSDVTQTINTVAYHAKSDSDQHFCTQY
IIHEDLTICRPEKVRQGKVWMASSSWLIDCVMSFKLLPLDN
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcacccccttgcccctgtgtgccccaaacaagaaatttggcaagttcctgcaagaat
ggaattaacatcatttctaaaactatctcagaatgtctcaatgcttctaccaacttggtc
tacatctacatgacactgacatcatccacctaccgccccgccctcctcgccccgccgcct
gcgtgcgggaaccgctggggtgaaggggtcgcgtctccggcctgctgcattgctgctggt
gctgctgaatttcggccgcggccccttcccacccgctcagcccctctcccaggcgtcctt
cccgcgaagctggccacgatgccgcctaagcggctgatcaaggcccactccgggaaccga
cctcgcctcgcgcccgccgcggagccggccggggaggcctggagccatagccgggccgcg
ctggagcggctggagcagctgctgcgttgctcgcgttgctctcatattctcaaggagcca
gtgtgtttaggaggatgtgagcacatcttctgtagtaattgtgtgagtgactacattgga
agcgaatgtccagtgtgttatactccagcctggatacaagatatcaagataaatagacaa
ctggacaacatgatccaactttgtagtaaacttcgaaatctaatatatggcaataagttt
tcagatttgaaagaagatacagctaggaaaagcttacttactaattcagagaataagaag
aattcaataaaaatgtggtttagtccccgaagtaagaaggtcagatatgtaatgaataca
atttcagtggaaaccagacctaaactagtaaatgatgaaaacaatcatcaggcttcattg
tatgactttgtttctgcaactcctccaacagttcctgagaagcctaaaaagacttgtaaa
cgatctggaaaaaggaaaaagaagaaaacgctaactgaaatcaaccagcaatggaattta
gtggcagagagggaaaatggtgaacttgcctcagaagaagtagttaaggacagacaggtg
tccttttgtgaccaaccatctattattgcaagtccacagaaaaacggtggaatagatgtt
actgtgaatggttctgaatcagcatcgcagttttgtgtaagcctcactgcagtctcttta
cccgtgattgatcttacagagtctccaaaaaccgaggataggaatgaagtggtgaccccg
aaggaaaatctctgtgcacgtgatccgacatcgaagaaatccttcactgcagctcttaat
ggaaaacgagagcctcacaacagactttccatgcccatttctaagcgatgcagacgcaca
gatccaggtcctgctggggagcctaccgtgccaacagcgctctcagaagacatgccctca
ctggacagtcctttgccaccttcaagcaagcctcaagttggtgcattgcggagaaaaagt
aatgatgtattagatgaaccctcgaggttttcaccaagcacgccaccctctacactgaac
agttcacattacaggcgtatgatgttgagcccttcagcaaagaagctgacatccagtact
ggcagccttgtggctctgaagagaaatcatagaggagagactccgctccatatcgcttca
attaagggtgatgtaccttctgttgaataccttttacaaaatggaagtgatccaaatgtt
aaagaccatgctggatggacaccattgcatgaagcctgcaaccatgggcacttgaaggta
gttgaattgctgctccagcacaaggcattagtgaacactactggatatcagaacgactca
cctcttcatgatgctgtcaagaacaggcatatagacatagtcaaattgttactttcctat
ggcgcctctacgaatgctgttaacatatttggtctgcggcctgtggattatgcagacagt
gaaaatatgaaatcactattgcagctccgagagaagagtgaatcatcattaactagccat
agcacagtggtgaacaccagtcagcgcaggaatcaccctttgatacttataggcagtgga
ctgtcttcagaacaacagaatatgctgagtgaacttgcagtaattcttaaagctaaaaaa
tgtgcagagtttgataatacagtaactcatgtcattgttcctggtatgacagttcaaagt
actctgaaatgtatgcttgggattctcaatggatgctggattctaaactttgagtgggta
aaagcatgtctacaaagtaaagaatgggaacaggaggaaaagtatgaaattcctgaagga
cctcagagaagcagactcaacagagaacagctgttgccaaagttgtttgatggatgctac
ttctatctggggggagtctacaaacaccacccaaaggaccatcttattaagctcatcaat
gcaggagggggccagattctcagtagaaagcccaagcctgacagtgatgtgacgcagacc
atcaataccgtcgcttaccacgccaaatctgattctgatcagcacttctgtacccagtat
atcatccatgaggatttgaccatttgtcgcccagagaaggttcgacagggcaaagtctgg
atggcttcttctagctggcttatagactgtgtgatgtccttcaaattgcttcctctcgac
aattaa
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