Serratia ficaria: SAMEA4384070_2424
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Entry
SAMEA4384070_2424 CDS
T06444
Symbol
ddpX
Name
(GenBank) D-alanyl-D-alanine dipeptidase
KO
K08641
zinc D-Ala-D-Ala dipeptidase [EC:
3.4.13.22
]
Organism
sfj
Serratia ficaria
Pathway
sfj01502
Vancomycin resistance
sfj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SAMEA4384070_2424 (ddpX)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
SAMEA4384070_2424 (ddpX)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sfj01002
]
SAMEA4384070_2424 (ddpX)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sfj01011
]
SAMEA4384070_2424 (ddpX)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
sfj01504
]
SAMEA4384070_2424 (ddpX)
Enzymes [BR:
sfj01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.13 Dipeptidases
3.4.13.22 D-Ala-D-Ala dipeptidase
SAMEA4384070_2424 (ddpX)
Peptidases and inhibitors [BR:
sfj01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
SAMEA4384070_2424 (ddpX)
Peptidoglycan biosynthesis and degradation proteins [BR:
sfj01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
SAMEA4384070_2424 (ddpX)
Antimicrobial resistance genes [BR:
sfj01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
SAMEA4384070_2424 (ddpX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M15
VanY
YcaO
Motif
Other DBs
NCBI-ProteinID:
SNW01378
UniProt:
A0A240C2N3
LinkDB
All DBs
Position
1:2557185..2557748
Genome browser
AA seq
187 aa
AA seq
DB search
MSDNVTLVDLAVRFPGLCIDLKYASADNLTGRAIYRESRCLLHPDAAQGLARCLRVAQLA
GYSLRVFDAYRPQQAQALLWLACPDSQYVTATEVGSHHSRGVAVDVTLQDAAGMALDMGT
GFDEMSARSHPFYPDFSPEVQRNRLLLSAVMAAGGFRGIASEWWHFELPNAGDYPLLADR
FGCFSPD
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaatgtaacgctagtggacctggccgttcgctttcccggcctgtgcatcgat
ttgaaatacgccagcgccgataacctgaccgggcgggcgatttaccgcgagagccgctgc
ctgctgcatcccgatgcggcgcaggggctggcgcgctgcctgcgggtggcgcagctggcc
ggctattccctgcgggtgttcgacgcctaccgcccgcagcaggcgcaggcgctgctgtgg
ctggcctgcccggactcgcagtatgtcaccgcgacggaggtcggctctcatcacagccgc
ggcgtggccgtcgacgtcacgctgcaggacgccgcgggcatggcgctggatatgggcacc
ggcttcgatgagatgagcgcgcgttcccacccgttttaccccgacttttcgccagaggtg
caacgcaatcggctattgctgagcgcggtgatggccgccggcggattccgcggcatcgcc
agcgaatggtggcactttgagctgcccaacgccggcgattacccgctgttggccgatcgc
ttcggctgtttttcccccgactaa
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