Sugiyamaella lignohabitans: AWJ20_1220
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Entry
AWJ20_1220 CDS
T05270
Symbol
HDA1
Name
(RefSeq) histone deacetylase HDA1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
slb
Sugiyamaella lignohabitans
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
slb01009
]
AWJ20_1220 (HDA1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_1220 (HDA1)
04131 Membrane trafficking [BR:
slb04131
]
AWJ20_1220 (HDA1)
03036 Chromosome and associated proteins [BR:
slb03036
]
AWJ20_1220 (HDA1)
Enzymes [BR:
slb01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
AWJ20_1220 (HDA1)
Protein phosphatases and associated proteins [BR:
slb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
AWJ20_1220 (HDA1)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
AWJ20_1220 (HDA1)
Membrane trafficking [BR:
slb04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
AWJ20_1220 (HDA1)
Chromosome and associated proteins [BR:
slb03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
AWJ20_1220 (HDA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2
Motif
Other DBs
NCBI-GeneID:
30032999
NCBI-ProteinID:
XP_018735419
UniProt:
A0A167DI36
LinkDB
All DBs
Position
A:complement(3849789..3852896)
Genome browser
AA seq
1035 aa
AA seq
DB search
MSSGTGDEVEQPKKSGVVEGSEQHAFKEEEPSKERNVKLLGNGGSEPETGSNGPSSNSAN
VPVKVDSNSGVTADVMDTDLNDVTSGPSEPANGDPLLHAQEHAHEHEHEQEAAHVLDSLV
SLSHNTVETDIDEVSAATAAAASAAAANAAAATVTAANAAASAAATAATTASAAAAIASV
AATTAAAEADAEAREKTTSISVNSNGLSKLDGDGNINPAISTDGSVSSLIGAATALKGEG
DMVDVTTPSMTPGSATIAPHSLSLTPTLDHASAPASDAMDISGDDELSHRVNGEATSQSH
SLLPFEDTTSFNQSTGQKRKRDEGEQRVEPKGAGDISDLKINRTEQPLSYDSISLSSSAS
PSVAHSTGGLINNVATTAIVSAVAPQLTHVPLKTGLCYDVRMRYHSRIVTSPYDYVDPHP
EDPRRIYRIYKAIAEAGLITDPNLEGVDDLGPLVQKIPVREASAEEILLVHSQEHLDFVE
STATMPRERLIEETEKGDSIYLNNDSHMAARLSCGGSIEACRAVVERKVKNSIAIVRPPG
HHAEPKTPGGFCLFSNVAVAAKAMLRDYPESVRRVMIIDWDVHHGNGTQHAFLDDDRVLY
ISLHRYEGGRFYPGTDFGAHTVVGEGPGKGYSVNIPWSHPGMGDGDYIYAFHKVIMPLAL
EFDPDLVIVSSGFDAAEGDLIGGCLVSPNGYGYMTHLLKSLANGNLVVVLEGGYSLSAIA
TSALAVVKVLLGDPNGVPKTKRPSSSAIRVIDDVIKVQSQFWKSLKPEINVVNLGEADRH
VRLTDAIRGSLAQKLATKHDLSLLPILNDNLPMVQDSQLLASPKIHSKEKIIIIVHDAPE
VWADRDPVTGAIDPNKSIVVDATETFINWGVENNYGILDINVPGDSDIMDDGYTIVANSQ
ETLIYVWDNYIEYFDAKHIVFVGTGDAYAGIVHLAGHREIRERTDAIVCFIGDISLKPIT
PVLDEYVTDWFFRSSLIFTSKEHPSWDVRINPKKPRKKFGRVIQSDSLSVYDIVDERFEE
ATEFIEELVDGEEEE
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcggcactggtgatgaggtggaacagcctaaaaagtcaggtgtagttgaaggt
agcgagcaacatgctttcaaggaagaagaaccaagtaaagaacggaatgtcaagctgcta
ggtaatggtggatcggagcccgaaactggttccaacggtccttccagtaatagtgctaat
gttcctgtcaaagtcgattctaattccggagtaaccgctgatgttatggatactgatctt
aatgacgtgacttctggtccatctgaaccagcgaatggagatccattacttcatgcccaa
gaacatgctcacgagcatgaacacgaacaggaagctgctcatgttttagattcattggtt
tccttgtcacataacacggtggagactgatatagatgaagtgtctgctgccactgctgct
gccgcttctgctgctgctgccaatgccgctgctgccactgttaccgctgccaatgctgct
gccagcgctgctgctactgctgccactactgccagtgctgctgctgccattgcttctgtt
gctgcgactactgctgctgctgaagctgatgctgaagctcgtgaaaaaactacatcgata
tccgtgaactcaaatggcctttcaaaacttgatggcgatggtaatataaatccagccatt
agtacggatggctctgtctcgtccctaattggagctgctacagcattaaagggtgaagga
gatatggtagatgtaacgacacctagtatgacgccagggagtgcaacaatagcacctcat
tctttgtcgcttactcccactttagatcatgcgtctgctcctgcgtccgatgcaatggat
atatctggtgatgacgaactgagtcatagagttaatggagaagcaacatcccaatcgcat
tcactactaccgtttgaggataccacatcattcaaccaaagcacgggacaaaaacgcaaa
cgtgacgaaggtgaacaacgtgtagagccaaaaggtgcaggtgatatcagcgatttgaag
atcaatcgaacagaacaaccactgtcttatgattcgatctctctgtcttcttcagcctct
ccttcagtagctcacagcacaggtggtctaattaataacgtcgctaccactgctattgta
tctgcagttgcacctcaactcacacatgtgcctctcaagactggtctatgttatgatgtc
aggatgagatatcactcacgaattgtcacctctccatatgattatgttgatccacatcct
gaagacccaaggcgtatatatagaatctacaaggccattgccgaagcagggcttatcacc
gatccaaacctggaaggtgtcgatgacttagggcccttggttcagaagattcctgtgcgt
gaggccagtgccgaagagattttacttgtccatagtcaggaacatcttgactttgttgag
tctactgcgacaatgcctagagagcggttaattgaagaaaccgaaaagggagactcaatc
tatcttaataacgactctcatatggcagctaggctctcttgtggtggttctattgaagct
tgtagagctgttgtcgagcgcaaagtgaagaattcaatcgcaattgtaagacccccgggt
catcatgctgagcccaaaacacctggtgggttttgtttattttccaatgtcgctgtggca
gccaaggccatgcttcgtgattatcccgagtcagttagacgggtaatgatcattgactgg
gatgtccaccacggcaatggtactcaacatgcgtttttggatgatgatagagtgctatac
atttcactacatcgttatgaagggggcagattttatcctggaactgattttggtgcccat
accgtggtaggtgaaggtcccggcaagggctattctgttaatattccctggtctcatcca
ggaatgggtgatggtgattatatatatgcattccataaggtcattatgcctctggcgctg
gagttcgatcctgatttagttatcgtgtcgtctggttttgacgctgctgagggtgactta
atcggtggttgtttagtatcacctaatggatatggatatatgactcatttactgaaatct
cttgcaaatggaaatctagtcgtggtcctggaaggaggttacagtctttcggctattgct
acatctgctttagctgtcgtcaaggtactattgggagaccctaatggcgtgcccaaaacc
aaacggcctagttcatcggcaattcgcgtcatcgacgacgtgatcaaagttcaatcgcaa
ttttggaagagtctgaagccggagattaatgttgtaaaccttggcgaggcggatcgacat
gtacgattaacagatgccattcgtggttcactagctcagaaattggctactaagcatgac
ttatccttgctacccattcttaatgacaaccttcctatggttcaagatagccagcttctg
gcgtctcctaaaatccactcaaaagaaaaaattattattattgttcacgatgcgcccgaa
gtgtgggcagatcgtgacccagttactggtgccattgacccaaacaaatcgattgtagtc
gatgctaccgagacatttattaattggggtgttgaaaataactatggtattttggatatc
aacgtacctggtgatagcgatattatggatgacgggtatacgatagttgcaaactcgcag
gagactttgatttatgtgtgggacaattatattgagtattttgatgccaaacatattgta
ttcgtcggtaccggtgatgcctatgcgggaattgttcatttggcgggccaccgtgagatc
cgggagcgtacagatgctatcgtatgttttattggcgacatttctctgaagccaataact
ccggttttggatgagtatgttacagactggttcttccgatcgtccctaatattcacgtct
aaagaacatccatcttgggacgtacgcattaatccaaagaaaccgcggaagaagttcggc
cgtgtcatccagtccgactctcttagcgtctatgatatcgttgatgagcgtttcgaagag
gctactgagttcatcgaagagttggtagacggcgaggaggaagaatag
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